RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 WASH4PA8MWX3 477 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 FGF10O15520 208 aaPredicted RBP14.69□□□□□ -0.06
USP39-220ENST00000613444 GREM1O60565 184 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 VPS41P49754 854 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 PRKD1Q15139 912 aaPredicted RBP14.69□□□□□ -0.06
USP39-220ENST00000613444 FAM133BQ5BKY9 247 aaKnown RBP14.69□□□□□ -0.06
USP39-220ENST00000613444 FAM182AQ5T1J6 154 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 RAP1GAP2Q684P5 730 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 RWDD4Q6NW29 188 aaKnown RBP14.69□□□□□ -0.06
USP39-220ENST00000613444 FBXL22Q6P050 247 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 RHBDF2Q6PJF5 856 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 RBM23Q86U06 439 aaKnown RBP14.69□□□□□ -0.06
USP39-220ENST00000613444 ELMOD1Q8N336 334 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 ARL14EPQ8N8R7 260 aaPredicted RBP14.69□□□□□ -0.06
USP39-220ENST00000613444 FBXO25Q8TCJ0 367 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 RSAD2Q8WXG1 361 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 ART4Q93070 314 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 IGSF8Q969P0 613 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 LGMNQ99538 433 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 LMAN2LQ9H0V9 348 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 PRDM12Q9H4Q4 367 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 ASAH2Q9NR71 780 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 NDFIP2Q9NV92 336 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 MPP6Q9NZW5 540 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 DNMT3BQ9UBC3 853 aaKnown RBP14.69□□□□□ -0.06
USP39-220ENST00000613444 ZNF212Q9UDV6 495 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 SZT2Q5T011 3432 aa14.69□□□□□ -0.06
USP39-220ENST00000613444 GOLGA6L7A0A1B0GV03 622 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 A0A1W2PRU2 124 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 DRGXA6NNA5 263 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 HACD1B0YJ81 288 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 MOSPD3O75425 235 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 IFNB1P01574 187 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 HNRNPA1P09651 372 aaKnown RBP eCLIP14.68□□□□□ -0.06
USP39-220ENST00000613444 VAV1P15498 845 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 GJA1P17302 382 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 CDC25CP30307 473 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 RPL22P35268 128 aaKnown RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 RBM10P98175 930 aaKnown RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 MTA1Q13330 715 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 KCNC3Q14003 757 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 HLTFQ14527 1009 aaKnown RBP eCLIP14.68□□□□□ -0.06
USP39-220ENST00000613444 C5orf22Q49AR2 442 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 MAP9Q49MG5 647 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 ACBD5Q5T8D3 534 aaPredicted RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 EMBQ6PCB8 327 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 BZW1Q7L1Q6 419 aaKnown RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 ARHGAP12Q8IWW6 846 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 TDHQ8IZJ6 230 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 CCHCR1Q8TD31 782 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 CAVIN3Q969G5 261 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 AZIN2Q96A70 460 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 SNF8Q96H20 258 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 SLC28A3Q9HAS3 691 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 TRPC7Q9HCX4 862 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 RAD54BQ9Y620 910 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 CFAP69A5D8W1 941 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 KCNN4O15554 427 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 ACSL4O60488 711 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 PAPLNO95428 1278 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 MBL2P11226 248 aaPredicted RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 HDCP19113 662 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 ITIH2P19823 946 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 SLC6A4P31645 630 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 ADCY8P40145 1251 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 PLTPP55058 493 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 GALNT2Q10471 571 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 PDK1Q15118 436 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 DUSP6Q16828 381 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 ALFQ53S48 1182 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 STXBP5Q5T5C0 1151 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 AFMIDQ63HM1 303 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 CDKL3Q8IVW4 592 aaPredicted RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 RTL3Q8N8U3 475 aaKnown RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 SHKBP1Q8TBC3 707 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 MRPS31Q92665 395 aaKnown RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 ZNF707Q96C28 371 aaPredicted RBP14.68□□□□□ -0.06
USP39-220ENST00000613444 GDAP1L1Q96MZ0 367 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 CATSPERBQ9H7T0 1116 aa14.68□□□□□ -0.06
USP39-220ENST00000613444 CNTN5O94779 1100 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 POU2F2P09086 479 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 MYL4P12829 197 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 CORO1AP31146 461 aaKnown RBP14.67□□□□□ -0.06
USP39-220ENST00000613444 HARS2P49590 506 aaKnown RBP14.67□□□□□ -0.06
USP39-220ENST00000613444 GPS1Q13098 491 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 P3H1Q32P28 736 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 DENND1CQ8IV53 801 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 MAB21L3Q8N8X9 362 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 TFB1MQ8WVM0 346 aaKnown RBP14.67□□□□□ -0.06
USP39-220ENST00000613444 TCEAL4Q96EI5 215 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 FUT8Q9BYC5 575 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 PRO3102Q9H379 93 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 ATXN3LQ9H3M9 355 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 NOL6Q9H6R4 1146 aaKnown RBP14.67□□□□□ -0.06
USP39-220ENST00000613444 SMPD4Q9NXE4 827 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 ZDHHC7Q9NXF8 308 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 STOML2Q9UJZ1 356 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 AGO1Q9UL18 857 aaKnown RBP14.67□□□□□ -0.06
USP39-220ENST00000613444 RFXAPO00287 272 aa14.67□□□□□ -0.06
USP39-220ENST00000613444 RHOP08100 348 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms