RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SLC35B2	Q8TB61	432 aa		12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	CKAP2	Q8WWK9	683 aa		12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	NTAN1	Q96AB6	310 aa		12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	TRMT2B	Q96GJ1	504 aa	Known RBP	12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	SERPINB11	Q96P15	392 aa		12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	CALN1	Q9BXU9	219 aa		12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	SMOC2	Q9H3U7	446 aa		12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	OLA1	Q9NTK5	396 aa	Known RBP	12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	OSER1	Q9NX31	292 aa		12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	UXT	Q9UBK9	157 aa	Predicted RBP	12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	ASB3	Q9Y575	518 aa		12.07	□□□□□ -0.48
VRK3-223	ENST00000601341	RANBP2	P49792	3224 aa	Known RBP	12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	SMIM23	A6NLE4	172 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	ALOX15B	O15296	676 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	CSPG5	O95196	566 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	IGLV3-25	P01717	112 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	SCTR	P47872	440 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	PPP3CC	P48454	512 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	CXCR3	P49682	368 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	CAMK1	Q14012	370 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	KRT81	Q14533	505 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	LLGL1	Q15334	1064 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	DPYSL2	Q16555	572 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	P3H1	Q32P28	736 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	ICE2	Q659A1	982 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	MSANTD2	Q6P1R3	559 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	RTL10	Q7L3V2	364 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	VSIG1	Q86XK7	387 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	LRRC34	Q8IZ02	419 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	CCDC185	Q8N715	623 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	MAGEC3	Q8TD91	643 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	DYDC1	Q8WWB3	177 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	RNF34	Q969K3	372 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	PSMG2	Q969U7	264 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	MAGEB18	Q96M61	343 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	ZNF512	Q96ME7	567 aa	Predicted RBP	12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	CDK5RAP1	Q96SZ6	601 aa	Known RBP	12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	WDCP	Q9H6R7	721 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	WDR6	Q9NNW5	1121 aa	Known RBP	12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	SSU72	Q9NP77	194 aa	Known RBP	12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	SLC24A2	Q9UI40	661 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	DNPEP	Q9ULA0	475 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	FZD10	Q9ULW2	581 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	SLC12A4	Q9UP95	1085 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	AP4E1	Q9UPM8	1137 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	ZNF148	Q9UQR1	794 aa		12.06	□□□□□ -0.48
VRK3-223	ENST00000601341	CFAP73	A6NFT4	308 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	ZNF487	B1APH4	448 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	PRPF4	O43172	522 aa	Known RBP eCLIP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	IRAK2	O43187	625 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	SUN1	O94901	812 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	LRG1	P02750	347 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	VIM	P08670	466 aa	Known RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	BRAF	P15056	766 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	ADRA1B	P35368	520 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	IRS1	P35568	1242 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	ARSE	P51690	589 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	CLCN4	P51793	760 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	SCAP	Q12770	1279 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	EIF4EBP2	Q13542	120 aa	Predicted RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	EFHC2	Q5JST6	749 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	C10orf120	Q5SQS8	335 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	UBAP2	Q5T6F2	1119 aa	Known RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	RNASEH2B	Q5TBB1	312 aa	Known RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	SNX30	Q5VWJ9	437 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	PPP2R2D	Q66LE6	453 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	RGS9BP	Q6ZS82	235 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	BBS12	Q6ZW61	710 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	CENPU	Q71F23	418 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	TRPM8	Q7Z2W7	1104 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	ZNF276	Q8N554	614 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	MAML1	Q92585	1016 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	CASP10	Q92851	521 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	MAK16	Q9BXY0	300 aa	Known RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	NKX2-4	Q9H2Z4	354 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	DHX35	Q9H5Z1	703 aa	Known RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	SLC28A3	Q9HAS3	691 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	GPATCH2L	Q9NWQ4	482 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	NKIRAS1	Q9NYS0	192 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	TRPM5	Q9NZQ8	1165 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	SFMBT1	Q9UHJ3	866 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	USP15	Q9Y4E8	981 aa	Predicted RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	ZNF840P	A6NDX5	716 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	TLR5	O60602	858 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	C8A	P07357	584 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	CD48	P09326	243 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	SLC2A3	P11169	496 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	KRT10	P13645	584 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	L1CAM	P32004	1257 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	CCR1	P32246	355 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	DPYSL3	Q14195	570 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	TRIP13	Q15645	432 aa	Predicted RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	CA9	Q16790	459 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	PPP6R3	Q5H9R7	873 aa	Predicted RBP	12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	BRMS1L	Q5PSV4	323 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	KAZN	Q674X7	775 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	TDH	Q8IZJ6	230 aa		12.05	□□□□□ -0.48
VRK3-223	ENST00000601341	ELMOD1	Q8N336	334 aa		12.05	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms