RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 ZNF280DQ6N043 979 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 PRPF39Q86UA1 669 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 DCAKDQ8WVC6 231 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 SIGLEC10Q96LC7 697 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 OSBPL2Q9H1P3 480 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 CRISPLD1Q9H336 500 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 PPCSQ9HAB8 311 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 SCML2Q9UQR0 700 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 SLC27A5Q9Y2P5 690 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 LTBP2Q14767 1821 aa17.52■□□□□ 0.4
SHKBP1-216ENST00000598201 OR6C75A6NL08 312 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 TRIM66O15016 1216 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 PAGE1O75459 146 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 C1QAP02745 245 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 SRGAP2BP0DMP2 458 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 ATP2A2P16615 1042 aaKnown RBP17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 KRT15P19012 456 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 DRD4P21917 467 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 PSMB4P28070 264 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 FDFT1P37268 417 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 KBTBD12Q3ZCT8 623 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 ADGRD1Q6QNK2 874 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 PDZD4Q76G19 769 aaPredicted RBP17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 C16orf59Q7L2K0 433 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 PDCD7Q8N8D1 485 aaKnown RBP17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 CHMP6Q96FZ7 201 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 TRABDQ9H4I3 376 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 ZC3H7BQ9UGR2 993 aaKnown RBP17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 TTLL3Q9Y4R7 772 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 MYO16Q9Y6X6 1858 aa17.52■□□□□ 0.39
SHKBP1-216ENST00000598201 SPAG7O75391 227 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 STK10O94804 968 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 PTPN3P26045 913 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 MAGEA10P43363 369 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 MAGEA11P43364 429 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 PPIDQ08752 370 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 NR1H3Q13133 447 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 BRMS1LQ5PSV4 323 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 CNKSR3Q6P9H4 555 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 MON1AQ86VX9 555 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 CELF6Q96J87 481 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 CYTH2Q99418 400 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 CCDC134Q9H6E4 229 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 GMIPQ9P107 970 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 RAD54BQ9Y620 910 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 MRPL42Q9Y6G3 142 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 TBC1D4O60343 1298 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 CPB1P15086 417 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 CCR1P32246 355 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 ZNF135P52742 658 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 GALNT2Q10471 571 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 RWDD4Q6NW29 188 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 RNF19BQ6ZMZ0 732 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 C4orf33Q8N1A6 199 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 MZB1Q8WU39 189 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 GORASP1Q9BQQ3 440 aa17.51■□□□□ 0.39
SHKBP1-216ENST00000598201 NUP205Q92621 2012 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 MTMR11A4FU01 709 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 EBAG9O00559 213 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 HOXA2O43364 376 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 GARSP41250 739 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 MSH2P43246 934 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 IKBKEQ14164 716 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 PARP6Q2NL67 630 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 UNC5AQ6ZN44 842 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 PID1Q7Z2X4 250 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 GDAP1Q8TB36 358 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 FCRL2Q96LA5 508 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 HAPLN3Q96S86 360 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 FERMT1Q9BQL6 677 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 MRPL9Q9BYD2 267 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 FBXO44Q9H4M3 255 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 PIH1D1Q9NWS0 290 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 IL37Q9NZH6 218 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 CEP290O15078 2479 aa17.5■□□□□ 0.39
SHKBP1-216ENST00000598201 NCAM2O15394 837 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 SPAG6O75602 509 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 UPP2O95045 317 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 CPP00450 1065 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 FGBP02675 491 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 MANEALQ5VSG8 457 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 PRSS55Q6UWB4 352 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 LRRC34Q8IZ02 419 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 HDAC11Q96DB2 347 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 LRRC39Q96DD0 335 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 EBNA1BP2Q99848 306 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 TMEM175Q9BSA9 504 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 XAB2Q9HCS7 855 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 IGSF9Q9P2J2 1179 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 MAD1L1Q9Y6D9 718 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 CXorf49A8MYA2 514 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 KCNU1A8MYU2 1149 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 MOCS2O96007 188 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 ZBTB17Q13105 803 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 GPR17Q13304 367 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 PPP2R5DQ14738 602 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 FAM43BQ6ZT52 329 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 OTOP2Q7RTS6 562 aa17.49■□□□□ 0.39
SHKBP1-216ENST00000598201 DYDC1Q8WWB3 177 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms