RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SLC6A4P31645 630 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 IRAK1P51617 712 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 MRPS25P82663 173 aaKnown RBP15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 DR1Q01658 176 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 XRCC4Q13426 336 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 ADGRE1Q14246 886 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 GRIN2CQ14957 1233 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 COL19A1Q14993 1142 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 ELF2Q15723 593 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 RARS2Q5T160 578 aaKnown RBP15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 HTR3DQ70Z44 454 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 MAATS1Q7Z4T9 603 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 CHSY1Q86X52 802 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 DENND1CQ8IV53 801 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 FAM217AQ8IXS0 508 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 GPR161Q8N6U8 529 aaKnown RBP15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 RTL3Q8N8U3 475 aaKnown RBP15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 P3H4Q92791 437 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 IGSF8Q969P0 613 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 MYEOVQ96EZ4 313 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 RHOXF2Q9BQY4 288 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 CATSPERBQ9H7T0 1116 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 PIDD1Q9HB75 910 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 DTLQ9NZJ0 730 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 STIM2Q9P246 746 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 ZNF212Q9UDV6 495 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 VANGL2Q9ULK5 521 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 MRPS23Q9Y3D9 190 aaKnown RBP15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 NEU2Q9Y3R4 380 aa15.19■□□□□ 0.02
SHKBP1-211ENST00000595945 SOX1O00570 391 aaPredicted RBP15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 MCF2LO15068 1137 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 TTI1O43156 1089 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 RHOQP17081 205 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 HOXB8P17481 243 aaPredicted RBP15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 EIF3EP60228 445 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 CTC1Q2NKJ3 1217 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 ADGRF1Q5T601 910 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 AFMIDQ63HM1 303 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 RWDD4Q6NW29 188 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 TMCO3Q6UWJ1 677 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 LRRC31Q6UY01 552 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 DDX42Q86XP3 938 aaKnown RBP eCLIP15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 JAMLQ86YT9 394 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 CCDC105Q8IYK2 499 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 NPWQ8N729 165 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 ITFG1Q8TB96 612 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 GRK7Q8WTQ7 553 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 RUBCNQ92622 972 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 EPC1Q9H2F5 836 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 RETREG1Q9H6L5 497 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 TMEM248Q9NWD8 314 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 CLEC1BQ9P126 229 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 ZNF510Q9Y2H8 683 aa15.18■□□□□ 0.02
SHKBP1-211ENST00000595945 BCLAF3A2AJT9 711 aaKnown RBP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 HACD1B0YJ81 288 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 F5H5T6 163 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 LEFTY2O00292 366 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 ECEL1O95672 775 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 RBP3P10745 1247 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 SLC7A5Q01650 507 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 LMNB2Q03252 620 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 USP4Q13107 963 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 CCDC70Q6NSX1 233 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 SYDE1Q6ZW31 735 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 BZW1Q7L1Q6 419 aaKnown RBP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 ARHGAP12Q8IWW6 846 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 LGI2Q8N0V4 545 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 ALLCQ8N6M5 410 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 SEC14L1Q92503 715 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 USP13Q92995 863 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 ZSWIM3Q96MP5 696 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 PRICKLE1Q96MT3 831 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 QKIQ96PU8 341 aaKnown RBP eCLIP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 PNKPQ96T60 521 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 DDX50Q9BQ39 737 aaKnown RBP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 ZYG11BQ9C0D3 744 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 S1PR5Q9H228 398 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 MPP6Q9NZW5 540 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 CFAP97Q9P2B7 532 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 FEZ2Q9UHY8 353 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 LSM7Q9UK45 103 aaKnown RBP15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 HEY1Q9Y5J3 304 aa15.17■□□□□ 0.02
SHKBP1-211ENST00000595945 CNTN5O94779 1100 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 HEXIM1O94992 359 aaKnown RBP15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 PRAMEF12O95522 483 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 SERPINB6P35237 376 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 AVPR1AP37288 418 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 GALNT2Q10471 571 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 PTK6Q13882 451 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 PRKD1Q15139 912 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 ZNF77Q15935 545 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 ALFQ53S48 1182 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 DUPD1Q68J44 220 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 RFWD3Q6PCD5 774 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 CDKL3Q8IVW4 592 aaPredicted RBP15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 TP53INP2Q8IXH6 220 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 UMODL1-AS1Q8N2C9 162 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 CPXM2Q8N436 756 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 LZTR1Q8N653 840 aa15.16■□□□□ 0.02
SHKBP1-211ENST00000595945 RIN3Q8TB24 985 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms