RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 SNX1Q13596 522 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 BYSLQ13895 437 aaKnown RBP13.9□□□□□ -0.18
VMP1-217ENST00000593168 DPYSQ14117 519 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 OASLQ15646 514 aaKnown RBP13.9□□□□□ -0.18
VMP1-217ENST00000593168 PPM1LQ5SGD2 360 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 CES5AQ6NT32 575 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 RFX8Q6ZV50 586 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 TMEM150AQ86TG1 271 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 JAMLQ86YT9 394 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 IFT20Q8IY31 132 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 C12orf76Q8N812 135 aaPredicted RBP13.9□□□□□ -0.18
VMP1-217ENST00000593168 ATP6V0D2Q8N8Y2 350 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 ANKRD7Q92527 254 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 P3H4Q92791 437 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 NECTIN4Q96NY8 510 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 LRRC3Q9BY71 257 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 RAB17Q9H0T7 212 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 ZNF334Q9HCZ1 680 aaPredicted RBP13.9□□□□□ -0.18
VMP1-217ENST00000593168 GDF3Q9NR23 364 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 ARHGEF4Q9NR80 690 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 OR12D3Q9UGF7 316 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 DNPEPQ9ULA0 475 aa13.9□□□□□ -0.18
VMP1-217ENST00000593168 FAM72CH0Y354 149 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 CREB3O43889 395 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 LRIG2O94898 1065 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 GAS8O95995 478 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 OAS1P00973 400 aaKnown RBP13.89□□□□□ -0.19
VMP1-217ENST00000593168 ITGAVP06756 1048 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 POU2F2P09086 479 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 TNFRSF8P28908 595 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 MTHFRP42898 656 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 TPI1P60174 286 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 COG7P83436 770 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 BRD3Q15059 726 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 PAFAH1B3Q15102 231 aaKnown RBP13.89□□□□□ -0.19
VMP1-217ENST00000593168 NOMO1Q15155 1222 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 RARS2Q5T160 578 aaKnown RBP13.89□□□□□ -0.19
VMP1-217ENST00000593168 FAM72AQ5TYM5 149 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 NUGGCQ68CJ6 796 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 ASTLQ6HA08 431 aaPredicted RBP13.89□□□□□ -0.19
VMP1-217ENST00000593168 FAM72DQ6L9T8 149 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 ELMSAN1Q6PJG2 1045 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 BZW1Q7L1Q6 419 aaKnown RBP13.89□□□□□ -0.19
VMP1-217ENST00000593168 FAM72BQ86X60 149 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 MIB1Q86YT6 1006 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 TMC8Q8IU68 726 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 UNC45BQ8IWX7 931 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 EIF1ADQ8N9N8 165 aaKnown RBP13.89□□□□□ -0.19
VMP1-217ENST00000593168 SEC14L1Q92503 715 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 BTN2A3PQ96KV6 586 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 ERP44Q9BS26 406 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 NACA2Q9H009 215 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 LIMD1Q9UGP4 676 aa13.89□□□□□ -0.19
VMP1-217ENST00000593168 UTP11Q9Y3A2 253 aaKnown RBP13.89□□□□□ -0.19
VMP1-217ENST00000593168 CCDC151A5D8V7 595 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 MCF2LO15068 1137 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 DCLK1O15075 740 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 DAPK3O43293 454 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 COCHO43405 550 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 FGF19O95750 216 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 OLFM2O95897 454 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 HNRNPA1P09651 372 aaKnown RBP eCLIP13.88□□□□□ -0.19
VMP1-217ENST00000593168 H2AFXP16104 143 aaPredicted RBP13.88□□□□□ -0.19
VMP1-217ENST00000593168 PECAM1P16284 738 aaPredicted RBP13.88□□□□□ -0.19
VMP1-217ENST00000593168 PTPN2P17706 415 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 PFKLP17858 780 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 GABRR2P28476 465 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 CDC25CP30307 473 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 HOXC13P31276 330 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 EPHA5P54756 1037 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 EIF3EP60228 445 aaKnown RBP13.88□□□□□ -0.19
VMP1-217ENST00000593168 VSNL1P62760 191 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 GUCY2DQ02846 1103 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 XRCC4Q13426 336 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 MANEALQ5VSG8 457 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 NCBP2-AS2Q69YL0 99 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 C1orf228Q6PIY5 440 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 CCNI2Q6ZMN8 369 aaPredicted RBP13.88□□□□□ -0.19
VMP1-217ENST00000593168 PDZD4Q76G19 769 aaPredicted RBP13.88□□□□□ -0.19
VMP1-217ENST00000593168 LEMD2Q8NC56 503 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 MRPS31Q92665 395 aaKnown RBP13.88□□□□□ -0.19
VMP1-217ENST00000593168 AZIN2Q96A70 460 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 PLD4Q96BZ4 506 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 HAUS1Q96CS2 278 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 FAM118BQ9BPY3 351 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 EPB41L5Q9HCM4 733 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 MAN1C1Q9NR34 630 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 ARGLU1Q9NWB6 273 aaPredicted RBP13.88□□□□□ -0.19
VMP1-217ENST00000593168 SAE1Q9UBE0 346 aaPredicted RBP13.88□□□□□ -0.19
VMP1-217ENST00000593168 ZNF148Q9UQR1 794 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 RAD54BQ9Y620 910 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 HS3ST4Q9Y661 456 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 C2orf16Q68DN1 1984 aa13.88□□□□□ -0.19
VMP1-217ENST00000593168 RBP3P10745 1247 aa13.87□□□□□ -0.19
VMP1-217ENST00000593168 EPCAMP16422 314 aa13.87□□□□□ -0.19
VMP1-217ENST00000593168 ERCC2P18074 760 aa13.87□□□□□ -0.19
VMP1-217ENST00000593168 STIP1P31948 543 aaKnown RBP13.87□□□□□ -0.19
VMP1-217ENST00000593168 PTK6Q13882 451 aa13.87□□□□□ -0.19
VMP1-217ENST00000593168 DUPD1Q68J44 220 aa13.87□□□□□ -0.19
VMP1-217ENST00000593168 CWF19L1Q69YN2 538 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms