RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	CALCOCO1	Q9P1Z2	691 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	GGA2	Q9UJY4	613 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	FAM170A	A1A519	330 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	CYP1A1	P04798	512 aa	Predicted RBP	13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	PABPC1	P11940	636 aa	Known RBP	13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	NDUFV2	P19404	249 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	PRKCH	P24723	683 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	CCR1	P32246	355 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	NOS2	P35228	1153 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	STAT1	P42224	750 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	MATK	P42679	507 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	ZNF165	P49910	485 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	ZNF234	Q14588	700 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	C2CD6	Q53TS8	623 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	RAP1GAP2	Q684P5	730 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	SDE2	Q6IQ49	451 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	ADIPOR2	Q86V24	386 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	CHSY1	Q86X52	802 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	ERICH1	Q86X53	443 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	MFN1	Q8IWA4	741 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	AHI1	Q8N157	1196 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	FRMD1	Q8N878	549 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	RLN3	Q8WXF3	142 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	MRGPRX1	Q96LB2	322 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	NPY6R	Q99463	290 aa		13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	PRMT1	Q99873	361 aa	Known RBP	13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.78	□□□□□ -0.2
SREBF1-223	ENST00000584760	SYNJ2BP-COX16	A0A087WUM0	186 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	SYCE3	A1L190	88 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	TYW5	A2RUC4	315 aa	Known RBP	13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	TIMM44	O43615	452 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	HYAL3	O43820	417 aa	Predicted RBP	13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	LUC7L3	O95232	432 aa	Known RBP	13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	SLC2A3	P11169	496 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	TFE3	P19532	575 aa	Predicted RBP	13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	TACR2	P21452	398 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	CD70	P32970	193 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	MAPK8	P45983	427 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	IQCB1	Q15051	598 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	E2F5	Q15329	346 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	PTPRN	Q16849	979 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	FUT11	Q495W5	492 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	FAM102A	Q5T9C2	384 aa	Predicted RBP	13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	TRNP1	Q6NT89	227 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	LRSAM1	Q6UWE0	723 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	TRIM72	Q6ZMU5	477 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	CHST9	Q7L1S5	443 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	LGI2	Q8N0V4	545 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	CFAP52	Q8N1V2	620 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	PGBD3	Q8N328	593 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	ZNF557	Q8N988	423 aa	Predicted RBP	13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	MSANTD4	Q8NCY6	345 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	FIBIN	Q8TAL6	211 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	CPA5	Q8WXQ8	436 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	NT5C3B	Q969T7	300 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	ERLEC1	Q96DZ1	483 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	SPACA7	Q96KW9	195 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	PIGV	Q9NUD9	493 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	RRN3	Q9NYV6	651 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	13.77	□□□□□ -0.21	5e-7	■■■□□ 16.2
SREBF1-223	ENST00000584760	COX16	Q9P0S2	106 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	STIM2	Q9P246	746 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	MBD1	Q9UIS9	605 aa	Predicted RBP	13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	LHX6	Q9UPM6	363 aa		13.77	□□□□□ -0.21
SREBF1-223	ENST00000584760	PI4KA	P42356	2102 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	SMTNL1	A8MU46	457 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760		M0QYT0	321 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	TEX33	O43247	280 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	MAP3K13	O43283	966 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	UNG	P13051	313 aa	Predicted RBP	13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	MMP8	P22894	467 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	FLT3	P36888	993 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	LMAN2	Q12907	356 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	NME3	Q13232	169 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	CDH18	Q13634	790 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	STARD3	Q14849	445 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	TRIM61	Q5EBN2	209 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	FSCB	Q5H9T9	825 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	MBLAC2	Q68D91	279 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	SERPINA13P	Q6UXR4	307 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	MMS22L	Q6ZRQ5	1243 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	ARMCX6	Q7L4S7	300 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	BNIPL	Q7Z465	357 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	ATP6V0D2	Q8N8Y2	350 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	CYB5D2	Q8WUJ1	264 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	PGAP3	Q96FM1	320 aa	Predicted RBP	13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	NUSAP1	Q9BXS6	441 aa	Known RBP	13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	MKRN2	Q9H000	416 aa	Known RBP	13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	SLC6A17	Q9H1V8	727 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	TMEM245	Q9H330	911 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	SLC32A1	Q9H598	525 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	CD93	Q9NPY3	652 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	RTN4	Q9NQC3	1192 aa	Known RBP	13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	TMEM59L	Q9UK28	342 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	INTS6	Q9UL03	887 aa	Known RBP	13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	STAP1	Q9ULZ2	295 aa		13.76	□□□□□ -0.21
SREBF1-223	ENST00000584760	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms