RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 KRIT1O00522 736 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 DCLK1O15075 740 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 LAMP2P13473 410 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 KCNA5P22460 613 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 SLC6A4P31645 630 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 NR2C2P49116 596 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 PAFAH1B3Q15102 231 aaKnown RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 LLGL1Q15334 1064 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 TMCO3Q6UWJ1 677 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 BBS7Q8IWZ6 715 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 HJURPQ8NCD3 748 aaPredicted RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 BPIFB1Q8TDL5 484 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 HLA-CQ95604 372 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 MYADMQ96S97 322 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 HERPUD2Q9BSE4 406 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 ZFP14Q9HCL3 533 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 EPS15L1Q9UBC2 864 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 RAD54BQ9Y620 910 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 CTAGE15A4D2H0 777 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 GFRA2O00451 464 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 MBTPS2O43462 519 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 CTAGE8P0CG41 777 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 CDH4P55283 916 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 DYNLT1P63172 113 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 ADCY2Q08462 1091 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 SIX1Q15475 284 aaPredicted RBP11.06□□□□□ -0.64
SS18-213ENST00000579640 MPP7Q5T2T1 576 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 ARTNQ5T4W7 220 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 NCBP2-AS2Q69YL0 99 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 MTSS1LQ765P7 747 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 CHST9Q7L1S5 443 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 CTAGE6Q86UF2 777 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 CTAGE4Q8IX94 777 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 PLD5Q8N7P1 536 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 RTL3Q8N8U3 475 aaKnown RBP11.06□□□□□ -0.64
SS18-213ENST00000579640 TTC16Q8NEE8 873 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 SPATA4Q8NEY3 305 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 P3H4Q92791 437 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 IGSF8Q969P0 613 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 TMEM248Q9NWD8 314 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 THG1LQ9NWX6 298 aaKnown RBP11.06□□□□□ -0.64
SS18-213ENST00000579640 SMARCAL1Q9NZC9 954 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 DOCK8Q8NF50 2099 aa11.06□□□□□ -0.64
SS18-213ENST00000579640 DOCK4Q8N1I0 1966 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 A0A1B0GVM2 712 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 TCRBV7S2A1N4TA0A589 114 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 GRXCR2A6NFK2 248 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 TCAF2A6NFQ2 919 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 HEPACAM2A8MVW5 462 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 CLDN11O75508 207 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 CYBBP04839 570 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 FCARP24071 287 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 VIPR2P41587 438 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 MAPKAPK2P49137 400 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 CCNG2Q16589 344 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 CYP1B1Q16678 543 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 PUS10Q3MIT2 529 aaKnown RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 MPPE1Q53F39 396 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 RFWD3Q6PCD5 774 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 DRICH1Q6PGQ1 229 aaPredicted RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 ADAT2Q7Z6V5 191 aaKnown RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 NLRP14Q86W24 1093 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 C12orf50Q8NA57 414 aaPredicted RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 TDRD5Q8NAT2 981 aaKnown RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 RIN3Q8TB24 985 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 DEPDC1BQ8WUY9 529 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 OSCP1Q8WVF1 389 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 PPM1EQ8WY54 764 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 ELSPBP1Q96BH3 223 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 TMA16Q96EY4 203 aaKnown RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 PRICKLE1Q96MT3 831 aaPredicted RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 RUNDC3BQ96NL0 473 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 MPP6Q9NZW5 540 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 CDH23Q9H251 3354 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 NCAM2O15394 837 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 PHF2O75151 1096 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 ECI2O75521 394 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 ZNF189O75820 626 aaPredicted RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 MX2P20592 715 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 CHRNA3P32297 505 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 IFNAR2P48551 515 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 OTUD4Q01804 1114 aaKnown RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 XRCC4Q13426 336 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 NOMO1Q15155 1222 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 PDGFRLQ15198 375 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 LEXMQ3ZCV2 418 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 ALFQ53S48 1182 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 MFSD6LQ8IWD5 586 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 ZDHHC14Q8IZN3 488 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 PRELID2Q8N945 189 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 ZNF557Q8N988 423 aaPredicted RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 ACTL9Q8TC94 416 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 CARD6Q9BX69 1037 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 AP1M1Q9BXS5 423 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 BRD8Q9H0E9 1235 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 LRRC19Q9H756 370 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 ETNK2Q9NVF9 386 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 DUS2Q9NX74 493 aaKnown RBP11.05□□□□□ -0.64
SS18-213ENST00000579640 FAM50BQ9Y247 325 aa11.05□□□□□ -0.64
SS18-213ENST00000579640 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms