RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TMX2-CTNND1H3BSU7 103 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 NTN3O00634 580 aaPredicted RBP16.93■□□□□ 0.3
VPS53-218ENST00000575207 CDC45O75419 566 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 NEBLO76041 1014 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3HP0C7X1 549 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 PRF1P14222 555 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 SLC8A1P32418 973 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 GNL1P36915 607 aaPredicted RBP16.93■□□□□ 0.3
VPS53-218ENST00000575207 PERM1Q5SV97 790 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3GQ6DHY5 549 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3CQ6IPX1 549 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 CHST9Q7L1S5 443 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 ZC3H3Q8IXZ2 948 aaKnown RBP16.93■□□□□ 0.3
VPS53-218ENST00000575207 DIS3L2Q8IYB7 885 aaKnown RBP16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3Q8IZP1 549 aaPredicted RBP16.93■□□□□ 0.3
VPS53-218ENST00000575207 CPXM2Q8N436 756 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 AADATQ8N5Z0 425 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.93■□□□□ 0.3
VPS53-218ENST00000575207 IGSF22Q8N9C0 903 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 SYT2Q8N9I0 419 aaPredicted RBP16.93■□□□□ 0.3
VPS53-218ENST00000575207 IFT43Q96FT9 208 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 HEXIM2Q96MH2 286 aaKnown RBP16.93■□□□□ 0.3
VPS53-218ENST00000575207 MTG2Q9H4K7 406 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 CYTH4Q9UIA0 394 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 PRAMEF33A0A0G2JMD5 474 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.92■□□□□ 0.3
VPS53-218ENST00000575207 PRAMEF26H0Y7S4 382 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 K7ENM7 598 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 MDM4O15151 490 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 PRAMEF10O60809 474 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 ATP5BP06576 529 aaKnown RBP16.92■□□□□ 0.3
VPS53-218ENST00000575207 HGFP14210 728 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 GTF2BQ00403 316 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 B3GNT8Q7Z7M8 397 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 BRSK2Q8IWQ3 736 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 DDI1Q8WTU0 396 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 HPDLQ96IR7 371 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 FAM84AQ96KN4 292 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 DPEP3Q9H4B8 488 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 FBXO44Q9H4M3 255 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 EPB41L5Q9HCM4 733 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 SALL4Q9UJQ4 1053 aa16.92■□□□□ 0.3
VPS53-218ENST00000575207 TULP1O00294 542 aaPredicted RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 RNGTTO60942 597 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 SIN3BO75182 1162 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 TACC1O75410 805 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 FAM163BP0C2L3 166 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 CD82P27701 267 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 GNL2Q13823 731 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 DHX8Q14562 1220 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 HNRNPA1L2Q32P51 320 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 RUFY3Q7L099 469 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 SV2AQ7L0J3 742 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 TIPARPQ7Z3E1 657 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 MMAAQ8IVH4 418 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 AHI1Q8N157 1196 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 TMEM145Q8NBT3 493 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 NANOS1Q8WY41 292 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 FAM131CQ96AQ9 280 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 MYO19Q96H55 970 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 EPAS1Q99814 870 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 MRPL45Q9BRJ2 306 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 DCLK3Q9C098 648 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 STRADBQ9C0K7 418 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 SNX25Q9H3E2 840 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 DMAP1Q9NPF5 467 aaPredicted RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 PISDQ9UG56 409 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 AGO1Q9UL18 857 aaKnown RBP16.91■□□□□ 0.3
VPS53-218ENST00000575207 CA5BQ9Y2D0 317 aa16.91■□□□□ 0.3
VPS53-218ENST00000575207 JMJD7P0C870 316 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 HOXD9P28356 352 aaPredicted RBP16.9■□□□□ 0.3
VPS53-218ENST00000575207 MAT2AP31153 395 aaKnown RBP16.9■□□□□ 0.3
VPS53-218ENST00000575207 ABCD1P33897 745 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 SLC12A3P55017 1021 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 ARID5BQ14865 1188 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 ZNF174Q15697 407 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 KRT79Q5XKE5 535 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 MBLAC2Q68D91 279 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 PAQR9Q6ZVX9 377 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 TRIM69Q86WT6 500 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 FAM217AQ8IXS0 508 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 EFCAB3Q8N7B9 438 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 TEX19Q8NA77 164 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 B3GALNT2Q8NCR0 500 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 PREBQ9HCU5 417 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.9■□□□□ 0.3
VPS53-218ENST00000575207 FOXJ2Q9P0K8 574 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 NUDT5Q9UKK9 219 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 ODF2LQ9ULJ1 636 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 CSNK1G3Q9Y6M4 447 aa16.9■□□□□ 0.3
VPS53-218ENST00000575207 NPHP3-ACAD11A0A0J9YXS1 232 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 LDLRP01130 860 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 C5AR1P21730 350 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 HNRNPKP61978 463 aaKnown RBP eCLIP16.89■□□□□ 0.29
VPS53-218ENST00000575207 NAA30Q147X3 362 aaPredicted RBP16.89■□□□□ 0.29
VPS53-218ENST00000575207 DRAP1Q14919 205 aaPredicted RBP16.89■□□□□ 0.29
VPS53-218ENST00000575207 NR0B2Q15466 257 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 ARSHQ5FYA8 562 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 C9orf64Q5T6V5 341 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 FAM35AQ86V20 835 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms