RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RETREG1Q9H6L5 497 aa14.1□□□□□ -0.15
CCDC40-209ENST00000573474 GDF3Q9NR23 364 aa14.1□□□□□ -0.15
CCDC40-209ENST00000573474 CHD7Q9P2D1 2997 aa14.1□□□□□ -0.15
CCDC40-209ENST00000573474 VANGL2Q9ULK5 521 aa14.1□□□□□ -0.15
CCDC40-209ENST00000573474 GOLGA6L7A0A1B0GV03 622 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 BCLAF3A2AJT9 711 aaKnown RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 CFAP69A5D8W1 941 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 F5H5T6 163 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 SGK1O00141 431 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 NRG2O14511 850 aaPredicted RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 NCAM2O15394 837 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 MFSD11O43934 449 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 ZNF189O75820 626 aaPredicted RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 KRT14P02533 472 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 MX2P20592 715 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 TNFRSF8P28908 595 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 DRG2P55039 364 aaKnown RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 NTHL1P78549 312 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 HYAL1Q12794 435 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 PTK6Q13882 451 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 SLC5A9Q2M3M2 681 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 C5orf22Q49AR2 442 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 FAM133BQ5BKY9 247 aaKnown RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 TCEAL5Q5H9L2 206 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 STXBP5Q5T5C0 1151 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 ADGRF1Q5T601 910 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 DUPD1Q68J44 220 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 CCNI2Q6ZMN8 369 aaPredicted RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 DDX42Q86XP3 938 aaKnown RBP eCLIP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 RTL3Q8N8U3 475 aaKnown RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 CCHCR1Q8TD31 782 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 ADAMTS19Q8TE59 1207 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 SEC14L1Q92503 715 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 WBP2Q969T9 261 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 OLFM3Q96PB7 478 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 HINFPQ9BQA5 517 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 TMEM121Q9BTD3 319 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 BRD8Q9H0E9 1235 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 FAM114A2Q9NRY5 505 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 STOML2Q9UJZ1 356 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 LSM7Q9UK45 103 aaKnown RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 AGO1Q9UL18 857 aaKnown RBP14.09□□□□□ -0.15
CCDC40-209ENST00000573474 ARHGAP26Q9UNA1 814 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 ZNF510Q9Y2H8 683 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 NEU2Q9Y3R4 380 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 ANAPC1Q9H1A4 1944 aa14.09□□□□□ -0.15
CCDC40-209ENST00000573474 TMEM265A0A087WTH1 108 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 PPP1R12AO14974 1030 aaPredicted RBP14.08□□□□□ -0.16
CCDC40-209ENST00000573474 GREM1O60565 184 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 AVPR1AP37288 418 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 VSNL1P62760 191 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 MLLT1Q03111 559 aaPredicted RBP14.08□□□□□ -0.16
CCDC40-209ENST00000573474 CUL1Q13616 776 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 BRD3Q15059 726 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 SLC45A4Q5BKX6 768 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 RABGAP1LQ5R372 815 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 TMC5Q6UXY8 1006 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 HTR3DQ70Z44 454 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 NLRP14Q86W24 1093 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 CMTM8Q8IZV2 173 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 LGI2Q8N0V4 545 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 CCDC89Q8N998 374 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 TFB1MQ8WVM0 346 aaKnown RBP14.08□□□□□ -0.16
CCDC40-209ENST00000573474 CASKIN2Q8WXE0 1202 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 IGSF8Q969P0 613 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 RPRD1AQ96P16 312 aaPredicted RBP14.08□□□□□ -0.16
CCDC40-209ENST00000573474 QKIQ96PU8 341 aaKnown RBP eCLIP14.08□□□□□ -0.16
CCDC40-209ENST00000573474 KLC2Q9H0B6 622 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 USP29Q9HBJ7 922 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 TMEM248Q9NWD8 314 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 MPP6Q9NZW5 540 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 CFAP97Q9P2B7 532 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 MRPS23Q9Y3D9 190 aaKnown RBP14.08□□□□□ -0.16
CCDC40-209ENST00000573474 SH3BP1Q9Y3L3 701 aa14.08□□□□□ -0.16
CCDC40-209ENST00000573474 RANBP2P49792 3224 aaKnown RBP14.08□□□□□ -0.16
CCDC40-209ENST00000573474 ESYT3A0FGR9 886 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 ZSCAN5CA6NGD5 496 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-209ENST00000573474 LEFTY2O00292 366 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 MAP3K6O95382 1288 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 SLC6A4P31645 630 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 ZXDBP98169 803 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 GALNT2Q10471 571 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 RARS2Q5T160 578 aaKnown RBP14.07□□□□□ -0.16
CCDC40-209ENST00000573474 ANKRD54Q6NXT1 300 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 RFWD3Q6PCD5 774 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 Q6ZNB5 142 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 NPWQ8N729 165 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 EIF1ADQ8N9N8 165 aaKnown RBP14.07□□□□□ -0.16
CCDC40-209ENST00000573474 FAM71DQ8N9W8 422 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 IFT81Q8WYA0 676 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 RTP4Q96DX8 246 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 FERMT1Q9BQL6 677 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 TRIM31Q9BZY9 425 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 DPH5Q9H2P9 285 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 PRDM12Q9H4Q4 367 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 C10orf88Q9H8K7 445 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 PCDH9Q9HC56 1237 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 ARGLU1Q9NWB6 273 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-209ENST00000573474 ASIC3Q9UHC3 531 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 SNX24Q9Y343 169 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms