RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CHSY1Q86X52 802 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 ERICH1Q86X53 443 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 MFN1Q8IWA4 741 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 DEFB106AQ8N104 65 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 AHI1Q8N157 1196 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 WDTC1Q8N5D0 677 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 C12orf50Q8NA57 414 aaPredicted RBP8.4□□□□□ -1.06
VPS53-214ENST00000572607 C18orf8Q96DM3 657 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 BTN2A3PQ96KV6 586 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 FCRL2Q96LA5 508 aaPredicted RBP8.4□□□□□ -1.06
VPS53-214ENST00000572607 GABRG3Q99928 467 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 NAA15Q9BXJ9 866 aaKnown RBP8.4□□□□□ -1.06
VPS53-214ENST00000572607 GANQ9H2C0 597 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 NLRC4Q9NPP4 1024 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 TMEM51Q9NW97 253 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 DDIT4Q9NX09 232 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 ELOVL2Q9NXB9 296 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 CACNA2D2Q9NY47 1150 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 RRN3Q9NYV6 651 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 COX16Q9P0S2 106 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 STIM2Q9P246 746 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 GGA2Q9UJY4 613 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 RALYQ9UKM9 306 aaKnown RBP8.4□□□□□ -1.06
VPS53-214ENST00000572607 PLA2G4CQ9UP65 541 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 PAXBP1Q9Y5B6 917 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 PCDHGA5Q9Y5G8 931 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 STON1Q9Y6Q2 735 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 GOLGA6L7A0A1B0GV03 622 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ANTXRLA6NF34 631 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 H0Y626 953 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ZNF217O75362 1048 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 GRAP2O75791 330 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 MOCS3O95396 460 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 FYNP06241 537 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ATP5BP06576 529 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 CCDC172P0C7W6 258 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 PABPC1P11940 636 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 ZNF18P17022 549 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 CCR1P32246 355 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 CDH5P33151 784 aaPredicted RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 NOS2P35228 1153 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 KLK7P49862 253 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ZNF165P49910 485 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 RNASE9P60153 205 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 CDR2Q01850 454 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 NME3Q13232 169 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 CDH18Q13634 790 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 TAF5Q15542 800 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 CSRP2Q16527 193 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ST3GAL2Q16842 350 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 PLK5Q496M5 336 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 FAM133BQ5BKY9 247 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 ZC3H12AQ5D1E8 599 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 MS4A13Q5J8X5 152 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 RABGAP1LQ5R372 815 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 FAM102AQ5T9C2 384 aaPredicted RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 PIK3R6Q5UE93 754 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 DPY19L2P1Q6NXN4 242 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 RFWD3Q6PCD5 774 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 KIAA1324Q6UXG2 1013 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 SERPINA13PQ6UXR4 307 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 SLC36A4Q6YBV0 504 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 TRIM72Q6ZMU5 477 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 CHST9Q7L1S5 443 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 LPCAT2Q7L5N7 544 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 SLC26A9Q7LBE3 791 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 NOP9Q86U38 636 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 CARNMT1Q8N4J0 409 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ZNF397Q8NF99 534 aaPredicted RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 EPS8L1Q8TE68 723 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 SLC39A13Q96H72 371 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 PIWIL1Q96J94 861 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 ZC3H10Q96K80 434 aaKnown RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 SLC2A13Q96QE2 648 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ACOX2Q99424 681 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ARRDC1-AS1Q9H2J1 176 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 SEMA4GQ9NTN9 838 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 ABCB8Q9NUT2 735 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.39□□□□□ -1.07
VPS53-214ENST00000572607 THAP10Q9P2Z0 257 aaPredicted RBP8.39□□□□□ -1.07
VPS53-214ENST00000572607 INVSQ9Y283 1065 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 SPAG17Q6Q759 2223 aa8.39□□□□□ -1.07
VPS53-214ENST00000572607 A0A1W2PQF6 199 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 KCNU1A8MYU2 1149 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 GOLGA8SH3BPF8 625 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 M0QYT0 321 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 DCLK1O15075 740 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 AP5Z1O43299 807 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 F9P00740 461 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 IGLV3-25P01717 112 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 EPHX1P07099 455 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 MMEP08473 750 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 GABRG2P18507 467 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 POLR2EP19388 210 aaKnown RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 TACR2P21452 398 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 HLA-FP30511 346 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 SLC6A4P31645 630 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 SCNN1AP37088 669 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 P2RY2P41231 377 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 DPP6P42658 865 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms