RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 XPO6Q96QU8 1125 aaKnown RBP21.31■■□□□ 1
VPS53-210ENST00000571456 HAPLN3Q96S86 360 aa21.31■■□□□ 1
VPS53-210ENST00000571456 CTTNBP2NLQ9P2B4 639 aa21.31■■□□□ 1
VPS53-210ENST00000571456 PIAS3Q9Y6X2 628 aa21.31■■□□□ 1
VPS53-210ENST00000571456 SYNJ2BP-COX16A0A087WUM0 186 aa21.3■■□□□ 1
VPS53-210ENST00000571456 FAM170AA1A519 330 aa21.3■■□□□ 1
VPS53-210ENST00000571456 SOWAHDA6NJG2 315 aa21.3■■□□□ 1
VPS53-210ENST00000571456 MTA2O94776 668 aa21.3■■□□□ 1
VPS53-210ENST00000571456 ADH5P11766 374 aa21.3■■□□□ 1
VPS53-210ENST00000571456 ARSAP15289 507 aa21.3■■□□□ 1
VPS53-210ENST00000571456 SIM2Q14190 667 aaPredicted RBP21.3■■□□□ 1
VPS53-210ENST00000571456 RHBDF2Q6PJF5 856 aa21.3■■□□□ 1
VPS53-210ENST00000571456 CCDC26Q8TAB7 109 aa21.3■■□□□ 1
VPS53-210ENST00000571456 ZNF564Q8TBZ8 553 aaPredicted RBP21.3■■□□□ 1
VPS53-210ENST00000571456 COL26A1Q96A83 441 aa21.3■■□□□ 1
VPS53-210ENST00000571456 CHRDQ9H2X0 955 aa21.3■■□□□ 1
VPS53-210ENST00000571456 RETREG1Q9H6L5 497 aa21.3■■□□□ 1
VPS53-210ENST00000571456 HEBP1Q9NRV9 189 aa21.3■■□□□ 1
VPS53-210ENST00000571456 COX16Q9P0S2 106 aa21.3■■□□□ 1
VPS53-210ENST00000571456 ZMIZ1Q9ULJ6 1067 aa21.3■■□□□ 1
VPS53-210ENST00000571456 PCDHA13Q9Y5I0 950 aa21.3■■□□□ 1
VPS53-210ENST00000571456 MYOFQ9NZM1 2061 aa21.3■■□□□ 1
VPS53-210ENST00000571456 A0A0A6YYK5 440 aaPredicted RBP21.29■■□□□ 1
VPS53-210ENST00000571456 SPECC1L-ADORA2AF8WAN1 911 aa21.29■■□□□ 1
VPS53-210ENST00000571456 CCP110O43303 1012 aa21.29■■□□□ 1
VPS53-210ENST00000571456 CTHP32929 405 aa21.29■■□□□ 1
VPS53-210ENST00000571456 GJA4P35212 333 aa21.29■■□□□ 1
VPS53-210ENST00000571456 PCK1P35558 622 aa21.29■■□□□ 1
VPS53-210ENST00000571456 ARHGAP25P42331 645 aa21.29■■□□□ 1
VPS53-210ENST00000571456 TNK2Q07912 1038 aa21.29■■□□□ 1
VPS53-210ENST00000571456 SCAPQ12770 1279 aa21.29■■□□□ 1
VPS53-210ENST00000571456 CDO1Q16878 200 aa21.29■■□□□ 1
VPS53-210ENST00000571456 LY6G5CQ5SRR4 150 aa21.29■■□□□ 1
VPS53-210ENST00000571456 NUDT18Q6ZVK8 323 aa21.29■■□□□ 1
VPS53-210ENST00000571456 PSTKQ8IV42 348 aaKnown RBP21.29■■□□□ 1
VPS53-210ENST00000571456 LRRC8AQ8IWT6 810 aa21.29■■□□□ 1
VPS53-210ENST00000571456 PDLIM2Q96JY6 352 aa21.29■■□□□ 1
VPS53-210ENST00000571456 IER2Q9BTL4 223 aa21.29■■□□□ 1
VPS53-210ENST00000571456 SLC2A11Q9BYW1 496 aa21.29■■□□□ 1
VPS53-210ENST00000571456 TKTL2Q9H0I9 626 aa21.29■■□□□ 1
VPS53-210ENST00000571456 ANAPC7Q9UJX3 599 aa21.29■■□□□ 1
VPS53-210ENST00000571456 SHISA7A6NL88 538 aa21.28■■□□□ 1
VPS53-210ENST00000571456 F5H5T6 163 aa21.28■■□□□ 1
VPS53-210ENST00000571456 GFRA2O00451 464 aa21.28■■□□□ 1
VPS53-210ENST00000571456 GJB6O95452 261 aa21.28■■□□□ 1
VPS53-210ENST00000571456 MOCS2O96007 188 aaPredicted RBP21.28■■□□□ 1
VPS53-210ENST00000571456 PENKP01210 267 aaPredicted RBP21.28■■□□□ 1
VPS53-210ENST00000571456 LIMK1P53667 647 aa21.28■■□□□ 1
VPS53-210ENST00000571456 HADHBP55084 474 aaKnown RBP21.28■■□□□ 1
VPS53-210ENST00000571456 HDAC4P56524 1084 aa21.28■■□□□ 1
VPS53-210ENST00000571456 NRG1Q02297 640 aaPredicted RBP21.28■■□□□ 1
VPS53-210ENST00000571456 C15orf59Q2T9L4 293 aaPredicted RBP21.28■■□□□ 1
VPS53-210ENST00000571456 RABGAP1LQ5R372 815 aa21.28■■□□□ 1
VPS53-210ENST00000571456 HJURPQ8NCD3 748 aaPredicted RBP21.28■■□□□ 1
VPS53-210ENST00000571456 TMA16Q96EY4 203 aaKnown RBP21.28■■□□□ 1
VPS53-210ENST00000571456 BBS2Q9BXC9 721 aa21.28■■□□□ 1
VPS53-210ENST00000571456 PACSIN1Q9BY11 444 aa21.28■■□□□ 1
VPS53-210ENST00000571456 NBEAQ8NFP9 2946 aa21.28■■□□□ 1
VPS53-210ENST00000571456 GCN1Q92616 2671 aaKnown RBP21.27■■□□□ 1
VPS53-210ENST00000571456 LAMA1P25391 3075 aa21.27■■□□□ 1
VPS53-210ENST00000571456 BTNL10A8MVZ5 291 aa21.27■■□□□ 1
VPS53-210ENST00000571456 TRDMT1O14717 391 aaKnown RBP21.27■■□□□ 1
VPS53-210ENST00000571456 TM4SF5O14894 197 aa21.27■■□□□ 1
VPS53-210ENST00000571456 CACNG3O60359 315 aa21.27■■□□□ 1
VPS53-210ENST00000571456 PAGE1O75459 146 aa21.27■■□□□ 1
VPS53-210ENST00000571456 TFE3P19532 575 aaPredicted RBP21.27■■□□□ 1
VPS53-210ENST00000571456 MAN1A1P33908 653 aa21.27■■□□□ 1
VPS53-210ENST00000571456 ADRA1BP35368 520 aa21.27■■□□□ 1
VPS53-210ENST00000571456 CCR3P51677 355 aa21.27■■□□□ 1
VPS53-210ENST00000571456 ZNF135P52742 658 aaPredicted RBP21.27■■□□□ 1
VPS53-210ENST00000571456 E2F5Q15329 346 aa21.27■■□□□ 1
VPS53-210ENST00000571456 ANO4Q32M45 955 aa21.27■■□□□ 1
VPS53-210ENST00000571456 FAM133BQ5BKY9 247 aaKnown RBP21.27■■□□□ 1
VPS53-210ENST00000571456 MS4A13Q5J8X5 152 aa21.27■■□□□ 1
VPS53-210ENST00000571456 PIK3R6Q5UE93 754 aa21.27■■□□□ 1
VPS53-210ENST00000571456 LRRC31Q6UY01 552 aa21.27■■□□□ 1
VPS53-210ENST00000571456 RAD9BQ6WBX8 426 aa21.27■■□□□ 1
VPS53-210ENST00000571456 CHSY1Q86X52 802 aa21.27■■□□□ 1
VPS53-210ENST00000571456 FAM131BQ86XD5 332 aa21.27■■□□□ 1
VPS53-210ENST00000571456 DNAAF5Q86Y56 855 aa21.27■■□□□ 1
VPS53-210ENST00000571456 TMEM25Q86YD3 366 aa21.27■■□□□ 1
VPS53-210ENST00000571456 CCDC117Q8IWD4 279 aaPredicted RBP21.27■■□□□ 1
VPS53-210ENST00000571456 ZNF687Q8N1G0 1237 aa21.27■■□□□ 1
VPS53-210ENST00000571456 ARHGEF26Q96DR7 871 aa21.27■■□□□ 1
VPS53-210ENST00000571456 ADAM33Q9BZ11 813 aa21.27■■□□□ 1
VPS53-210ENST00000571456 OSBPL2Q9H1P3 480 aa21.27■■□□□ 1
VPS53-210ENST00000571456 CALCOCO1Q9P1Z2 691 aa21.27■■□□□ 1
VPS53-210ENST00000571456 NDRG2Q9UN36 371 aaKnown RBP21.27■■□□□ 1
VPS53-210ENST00000571456 TYRP14679 529 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 TACR2P21452 398 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 HTR7P34969 479 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 VAV2P52735 878 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 OGDHQ02218 1023 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 C5orf22Q49AR2 442 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 RNF43Q68DV7 783 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 UNQ6494/PRO21346Q6UXR6 183 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 SLFN11Q7Z7L1 901 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 SLC35G2Q8TBE7 412 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 DDI1Q8WTU0 396 aa21.26■□□□□ 0.99
VPS53-210ENST00000571456 FAM3CQ92520 227 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms