RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CHSY1Q86X52 802 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 MSANTD4Q8NCY6 345 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 WFIKKN2Q8TEU8 576 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 LOXL4Q96JB6 756 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 TBCBQ99426 244 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 C11orf70Q9BRQ4 267 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 RRN3Q9NYV6 651 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 MBD1Q9UIS9 605 aaPredicted RBP15.55■□□□□ 0.08
VPS39-210ENST00000568357 ANGPTL2Q9UKU9 493 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 INTS6Q9UL03 887 aaKnown RBP15.55■□□□□ 0.08
VPS39-210ENST00000568357 A0A1W2PQC6 194 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 F5H5T6 163 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 PAGE1O75459 146 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 LUC7L3O95232 432 aaKnown RBP15.54■□□□□ 0.08
VPS39-210ENST00000568357 SERPINC1P01008 464 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 NDUFV2P19404 249 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 PRKCHP24723 683 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 P2RY2P41231 377 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 CENPCQ03188 943 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 AUHQ13825 339 aaKnown RBP15.54■□□□□ 0.08
VPS39-210ENST00000568357 FUT11Q495W5 492 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 FBXL22Q6P050 247 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 ARCQ7LC44 396 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 BNIPLQ7Z465 357 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 C14orf80Q86SX3 495 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 AHI1Q8N157 1196 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 EMC1Q8N766 993 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 IGSF8Q969P0 613 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 PGAP3Q96FM1 320 aaPredicted RBP15.54■□□□□ 0.08
VPS39-210ENST00000568357 MRGPRX1Q96LB2 322 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 CFAP57Q96MR6 1250 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 ARRDC1-AS1Q9H2J1 176 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 TMPRSS4Q9NRS4 437 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 ARHGEF38Q9NXL2 777 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 STAP1Q9ULZ2 295 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 PLA2G4CQ9UP65 541 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 HS3ST4Q9Y661 456 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 RALGAPA1Q6GYQ0 2036 aa15.54■□□□□ 0.08
VPS39-210ENST00000568357 TYW5A2RUC4 315 aaKnown RBP15.53■□□□□ 0.08
VPS39-210ENST00000568357 GJB6O95452 261 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 F9P00740 461 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 HLA-EP13747 358 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 FERP16591 822 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 POLR2EP19388 210 aaKnown RBP15.53■□□□□ 0.08
VPS39-210ENST00000568357 PMLP29590 882 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 GGCXP38435 758 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 IRAK1P51617 712 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 FANCCQ00597 558 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 DEUP1Q05D60 604 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 CDH18Q13634 790 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 CCDC6Q16204 474 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 RAB6CQ53S08 254 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 SERPINA13PQ6UXR4 307 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 CIR1Q86X95 450 aaPredicted RBP15.53■□□□□ 0.08
VPS39-210ENST00000568357 PHF13Q86YI8 300 aaPredicted RBP15.53■□□□□ 0.08
VPS39-210ENST00000568357 TTC17Q96AE7 1141 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 SYT11Q9BT88 431 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 MKRN2Q9H000 416 aaKnown RBP15.53■□□□□ 0.08
VPS39-210ENST00000568357 TKTL2Q9H0I9 626 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 SIK2Q9H0K1 926 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 RAB6CQ9H0N0 254 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 TMEM245Q9H330 911 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 WDCPQ9H6R7 721 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 METTL5Q9NRN9 209 aaKnown RBP15.53■□□□□ 0.08
VPS39-210ENST00000568357 SEMA4GQ9NTN9 838 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 SEPT11Q9NVA2 429 aaKnown RBP15.53■□□□□ 0.08
VPS39-210ENST00000568357 ADAM22Q9P0K1 906 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 VANGL2Q9ULK5 521 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 MYO6Q9UM54 1294 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 ASPMQ8IZT6 3477 aa15.53■□□□□ 0.08
VPS39-210ENST00000568357 LRRC53A6NM62 1247 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 H0Y626 953 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 ZBTB24O43167 697 aaPredicted RBP15.52■□□□□ 0.08
VPS39-210ENST00000568357 GDF9O60383 454 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 RHOBTB1O94844 696 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 EPN2O95208 641 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 CAVIN2O95810 425 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 ATP5BP06576 529 aaKnown RBP15.52■□□□□ 0.08
VPS39-210ENST00000568357 EPHX1P07099 455 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 DLDP09622 509 aaKnown RBP15.52■□□□□ 0.08
VPS39-210ENST00000568357 CSKP41240 450 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 NSFP46459 744 aaKnown RBP15.52■□□□□ 0.08
VPS39-210ENST00000568357 STARD3Q14849 445 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 ELF2Q15723 593 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 CCDC14Q49A88 953 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 SH3PXD2AQ5TCZ1 1133 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 PMS2CLQ68D20 193 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 C11orf74Q86VG3 221 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 CCAR2Q8N163 923 aaKnown RBP15.52■□□□□ 0.08
VPS39-210ENST00000568357 ZNF366Q8N895 744 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 ZNF557Q8N988 423 aaPredicted RBP15.52■□□□□ 0.08
VPS39-210ENST00000568357 JOSD2Q8TAC2 188 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 RXFP2Q8WXD0 754 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 RPRD1AQ96P16 312 aaPredicted RBP15.52■□□□□ 0.08
VPS39-210ENST00000568357 TTYH3Q9C0H2 523 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 CD93Q9NPY3 652 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 KIAA1522Q9P206 1035 aaPredicted RBP15.52■□□□□ 0.08
VPS39-210ENST00000568357 SNX10Q9Y5X0 201 aa15.52■□□□□ 0.08
VPS39-210ENST00000568357 FRYQ5TBA9 3013 aa15.52■□□□□ 0.07
VPS39-210ENST00000568357 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms