RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PIGVQ9NUD9 493 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 GPATCH2LQ9NWQ4 482 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 DUSP12Q9UNI6 340 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 SCML2Q9UQR0 700 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 ATP8A1Q9Y2Q0 1164 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 NEU2Q9Y3R4 380 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 HEY1Q9Y5J3 304 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 ZDBF2Q9HCK1 2354 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 BCLAF3A2AJT9 711 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 HACD1B0YJ81 288 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 GOLGA8KD6RF30 607 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 EEF2KO00418 725 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 DNALI1O14645 258 aaPredicted RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 PAPLNO95428 1278 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 HAPLN1P10915 354 aaPredicted RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 SLC2A3P11169 496 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 LAMP2P13473 410 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 CCR1P32246 355 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 HSD17B3P37058 310 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 GGCXP38435 758 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 CXCR3P49682 368 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 VPS41P49754 854 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 ITGA8P53708 1063 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 ATXN1P54253 815 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 PTPN5P54829 565 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 CBX1P83916 185 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 IFFO1Q0D2I5 559 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 SCAPQ12770 1279 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 IFRD2Q12894 506 aaPredicted RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 MTA1Q13330 715 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 MORF4L2Q15014 288 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 CA9Q16790 459 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 P3H1Q32P28 736 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 MGAT5BQ3V5L5 792 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 PABPC1LQ4VXU2 614 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 TPGS2Q68CL5 300 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 ZDHHC24Q6UX98 284 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 DENND5BQ6ZUT9 1274 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 MTSS1LQ765P7 747 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 TRMT10CQ7L0Y3 403 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 TMC3Q7Z5M5 1100 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 CDKL3Q8IVW4 592 aaPredicted RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 PQLC3Q8N755 202 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 TSEN2Q8NCE0 465 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 PGLYRP2Q96PD5 576 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 CSPG4P5Q96PW8 444 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 MYADMQ96S97 322 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 IRF2BPLQ9H1B7 796 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 OSBPL2Q9H1P3 480 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 PABPC3Q9H361 631 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 CYP4F11Q9HBI6 524 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 TLR8Q9NR97 1041 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 OLA1Q9NTK5 396 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 TMEM30AQ9NV96 361 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 IL37Q9NZH6 218 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 CWC15Q9P013 229 aaKnown RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 HSFX1Q9UBD0 423 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 SAE1Q9UBE0 346 aaPredicted RBP9.22□□□□□ -0.93
VPS39-207ENST00000563692 SLC12A6Q9UHW9 1150 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 CDH7Q9ULB5 785 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 MAFFQ9ULX9 164 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 RAD54BQ9Y620 910 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 MUC6Q6W4X9 2439 aa9.22□□□□□ -0.93
VPS39-207ENST00000563692 MTMR11A4FU01 709 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 STK25O00506 426 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 NCAM2O15394 837 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 CREB3O43889 395 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 STK10O94804 968 aaKnown RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 PECAM1P16284 738 aaPredicted RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 GOT1P17174 413 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 AMPD1P23109 780 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 IVDP26440 423 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 OAS2P29728 719 aaKnown RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 AVPR2P30518 371 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 HTR7P34969 479 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 KPNA1P52294 538 aaPredicted RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 NUBP1P53384 320 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 DUSP4Q13115 394 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 PPP2R5DQ14738 602 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 PDK1Q15118 436 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 ACBD5Q5T8D3 534 aaPredicted RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 DENND2CQ68D51 928 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 HIBCHQ6NVY1 386 aaPredicted RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 RNF19BQ6ZMZ0 732 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 RFX8Q6ZV50 586 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 BHLHA9Q7RTU4 235 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 TADA2BQ86TJ2 420 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 ZC3H18Q86VM9 953 aaKnown RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 PPIL6Q8IXY8 311 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 ATAD1Q8NBU5 361 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 FLCNQ8NFG4 579 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 ADAM32Q8TC27 787 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 DQX1Q8TE96 717 aaKnown RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 SERPINB11Q96P15 392 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 ZIM3Q96PE6 472 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 HAPLN3Q96S86 360 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 CDK5RAP1Q96SZ6 601 aaKnown RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 SEPT5Q99719 369 aaPredicted RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 EPAS1Q99814 870 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 CCDC77Q9BR77 488 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms