RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 KCNC4Q03721 635 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 BST1Q10588 318 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 SF3B4Q15427 424 aaKnown RBP eCLIP13.65□□□□□ -0.223e-6■■■■□ 21.5
CLK3-206ENST00000562078 PHKG1Q16816 387 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 CCDC142Q17RM4 750 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ADGRD1Q6QNK2 874 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ENOSF1Q7L5Y1 443 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ZBTB33Q86T24 672 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 CLVS1Q8IUQ0 354 aaPredicted RBP13.65□□□□□ -0.22
CLK3-206ENST00000562078 DEFB107AQ8IZN7 70 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 TRAPPC12Q8WVT3 735 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ATP2A3Q93084 1043 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ISOC1Q96CN7 298 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ANKRD36BP1Q96IX9 119 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 SPATA33Q96N06 139 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 HAUS8Q9BT25 410 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 TMEM134Q9H6X4 195 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A7Q9HAW7 530 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A10Q9HAW8 530 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A8Q9HAW9 530 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 PADI4Q9UM07 663 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ZBTB42B2RXF5 422 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 PSMD12O00232 456 aaPredicted RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 DNALI1O14645 258 aaPredicted RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 ALOX15BO15296 676 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 AQP9O43315 295 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 BAIAP3O94812 1187 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 SLC1A1P43005 524 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 GAD2Q05329 585 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 OR5B17Q8NGF7 314 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 C12orf43Q96C57 262 aaKnown RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 CGRRF1Q99675 332 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 NUF2Q9BZD4 464 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 EHD1Q9H4M9 534 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 PSMD13Q9UNM6 376 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 ZNF236Q9UL36 1845 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 I3L4J1 428 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 MCF2LO15068 1137 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 MT-ND3P03897 115 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 TXNP10599 105 aaKnown RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 AOC1P19801 751 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 PRDX6P30041 224 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 TNFSF9P41273 254 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 GSSP48637 474 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 CDH15P55291 814 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 TMPRSS15P98073 1019 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 LAMTOR4Q0VGL1 99 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 KLF1Q13351 362 aaPredicted RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 TTLL4Q14679 1199 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 CLEC16AQ2KHT3 1053 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 ARL13BQ3SXY8 428 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 RARS2Q5T160 578 aaKnown RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 GPR180Q86V85 440 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 RNF149Q8NC42 400 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 DCAKDQ8WVC6 231 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 ALKBH8Q96BT7 664 aaKnown RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 THAP11Q96EK4 314 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 ZNF668Q96K58 619 aaPredicted RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 LRGUKQ96M69 825 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 CENPOQ9BU64 300 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 FOXP3Q9BZS1 431 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 C20orf27Q9GZN8 174 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 NRDE2Q9H7Z3 1164 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 PDGFCQ9NRA1 345 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.64□□□□□ -0.23
CLK3-206ENST00000562078 C6orf203Q9P0P8 240 aaPredicted RBP13.64□□□□□ -0.23
CLK3-206ENST00000562078 GTF3C4Q9UKN8 822 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 RNF11Q9Y3C5 154 aa13.64□□□□□ -0.23
CLK3-206ENST00000562078 CNTNAP2Q9UHC6 1331 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 MSCO60682 206 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 SULT1C4O75897 302 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 FBXO21O94952 628 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 IL1BP01584 269 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 CYP1A2P05177 515 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 GJB1P08034 283 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 MZF1P28698 734 aaPredicted RBP13.63□□□□□ -0.23
CLK3-206ENST00000562078 COPAP53621 1224 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 CENPCQ03188 943 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 GPS1Q13098 491 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 TBCCQ15814 346 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 CDHR3Q6ZTQ4 885 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 TBC1D15Q8TC07 691 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 SLC2A11Q9BYW1 496 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 CAAP1Q9H8G2 361 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 COPS7BQ9H9Q2 264 aaPredicted RBP13.63□□□□□ -0.23
CLK3-206ENST00000562078 APOBEC3GQ9HC16 384 aaKnown RBP13.63□□□□□ -0.23
CLK3-206ENST00000562078 VTA1Q9NP79 307 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 SCHIP1Q9P0W5 487 aaPredicted RBP13.63□□□□□ -0.23
CLK3-206ENST00000562078 CDC14AQ9UNH5 594 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 A8MU76 341 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 ZMPSTE24O75844 475 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 ATE1O95260 518 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 CD247P20963 164 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 PCYT1AP49585 367 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 EFNA5P52803 228 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 CRHR2Q13324 411 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 IER5Q5VY09 327 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 ACAD10Q6JQN1 1059 aa13.63□□□□□ -0.23
CLK3-206ENST00000562078 RWDD4Q6NW29 188 aaKnown RBP13.63□□□□□ -0.23
CLK3-206ENST00000562078 ZPBP2Q6X784 338 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms