RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MARSP56192 900 aaKnown RBP19.72■□□□□ 0.75
VPS35-202ENST00000561713 STILQ15468 1287 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 FOXR2Q6PJQ5 311 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 CREBRFQ8IUR6 639 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 GOLGA1Q92805 767 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 LRIG1Q96JA1 1093 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 FCRL2Q96LA5 508 aaPredicted RBP19.72■□□□□ 0.75
VPS35-202ENST00000561713 CDC6Q99741 560 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 NUCKS1Q9H1E3 243 aaKnown RBP19.72■□□□□ 0.75
VPS35-202ENST00000561713 MTG2Q9H4K7 406 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 C6orf106Q9H6K1 298 aaPredicted RBP19.72■□□□□ 0.75
VPS35-202ENST00000561713 UBE2TQ9NPD8 197 aaPredicted RBP19.72■□□□□ 0.75
VPS35-202ENST00000561713 XPO7Q9UIA9 1087 aaKnown RBP19.72■□□□□ 0.75
VPS35-202ENST00000561713 PCDHGB2Q9Y5G2 931 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 FLRT2O43155 660 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 ACSL4O60488 711 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 LETM1O95202 739 aaPredicted RBP19.71■□□□□ 0.75
VPS35-202ENST00000561713 GNA14O95837 355 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 ACSL1P33121 698 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 AFF3P51826 1226 aaKnown RBP19.71■□□□□ 0.75
VPS35-202ENST00000561713 RPS24P62847 133 aaKnown RBP19.71■□□□□ 0.75
VPS35-202ENST00000561713 PTPRNQ16849 979 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 KIF19Q2TAC6 998 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 PIK3R6Q5UE93 754 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 NUGGCQ68CJ6 796 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 MBLAC2Q68D91 279 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 SCUBE3Q8IX30 993 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.71■□□□□ 0.75
VPS35-202ENST00000561713 WFIKKN2Q8TEU8 576 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 HSFY1Q96LI6 401 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 BBC3Q96PG8 261 aaPredicted RBP19.71■□□□□ 0.75
VPS35-202ENST00000561713 MED15Q96RN5 788 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 SNX11Q9Y5W9 270 aa19.71■□□□□ 0.75
VPS35-202ENST00000561713 CABIN1Q9Y6J0 2220 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 E5RJQ4 531 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 THAP12O43422 761 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 FBXO21O94952 628 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 GNA15P30679 374 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 GPD2P43304 727 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 ZNF445P59923 1031 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 PITX1P78337 314 aaPredicted RBP19.7■□□□□ 0.74
VPS35-202ENST00000561713 ARHGAP44Q17R89 818 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 SYPL2Q5VXT5 272 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 MMS22LQ6ZRQ5 1243 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 MFN1Q8IWA4 741 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 AHI1Q8N157 1196 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 OR2T3Q8NH03 318 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 LHX5Q9H2C1 402 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 TMEM245Q9H330 911 aa19.7■□□□□ 0.74
VPS35-202ENST00000561713 AJAP1Q9UKB5 411 aaPredicted RBP19.7■□□□□ 0.74
VPS35-202ENST00000561713 FAM149AA5PLN7 773 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 BECN2A8MW95 431 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 KCNK3O14649 394 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 PAPSS1O43252 624 aaPredicted RBP19.69■□□□□ 0.74
VPS35-202ENST00000561713 TIMM44O43615 452 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 SLC9A1P19634 815 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 USP8P40818 1118 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 SLC11A2P49281 568 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 CYP4F3Q08477 520 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 CAMK2GQ13555 558 aaPredicted RBP19.69■□□□□ 0.74
VPS35-202ENST00000561713 E2F5Q15329 346 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 TRIM65Q6PJ69 517 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 LAYNQ6UX15 382 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 PASD1Q8IV76 773 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 CFAP52Q8N1V2 620 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 HJURPQ8NCD3 748 aaPredicted RBP19.69■□□□□ 0.74
VPS35-202ENST00000561713 SERPINB11Q96P15 392 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 PCED1AQ9H1Q7 454 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 TM9SF3Q9HD45 589 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 SCUBE2Q9NQ36 999 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 DKK4Q9UBT3 224 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 CNTN6Q9UQ52 1028 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 ANKRD6Q9Y2G4 727 aa19.69■□□□□ 0.74
VPS35-202ENST00000561713 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.69■□□□□ 0.74
VPS35-202ENST00000561713 FAM170AA1A519 330 aa19.68■□□□□ 0.74
VPS35-202ENST00000561713 TRABD2BA6NFA1 517 aa19.68■□□□□ 0.74
VPS35-202ENST00000561713 PNMA6AP0CW24 399 aaPredicted RBP19.68■□□□□ 0.74
VPS35-202ENST00000561713 CAMK2BQ13554 666 aa19.68■□□□□ 0.74
VPS35-202ENST00000561713 SUZ12Q15022 739 aaKnown RBP19.68■□□□□ 0.74
VPS35-202ENST00000561713 UNC45BQ8IWX7 931 aa19.68■□□□□ 0.74
VPS35-202ENST00000561713 CARNMT1Q8N4J0 409 aa19.68■□□□□ 0.74
VPS35-202ENST00000561713 KIAA1468Q9P260 1216 aa19.68■□□□□ 0.74
VPS35-202ENST00000561713 RWDD2AQ9UIY3 292 aa19.68■□□□□ 0.74
VPS35-202ENST00000561713 CSKP41240 450 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 RPL34P49207 117 aaKnown RBP19.67■□□□□ 0.74
VPS35-202ENST00000561713 PDCLQ13371 301 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 TAF5Q15542 800 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 CCDC157Q569K6 752 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 KCNT1Q5JUK3 1230 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 RAP1GAP2Q684P5 730 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 KIAA0907Q7Z7F0 614 aaPredicted RBP19.67■□□□□ 0.74
VPS35-202ENST00000561713 CHSY1Q86X52 802 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 CIR1Q86X95 450 aaPredicted RBP19.67■□□□□ 0.74
VPS35-202ENST00000561713 GALNT15Q8N3T1 639 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 ZNF606Q8WXB4 792 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 BIRC7Q96CA5 298 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 SLC39A13Q96H72 371 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 LMLNQ96KR4 655 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 SLC4A5Q9BY07 1137 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 PRSS16Q9NQE7 514 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms