RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PHBP35232 272 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 GARSP41250 739 aaKnown RBP13.27□□□□□ -0.28
SNX1-211ENST00000560829 SLCO1A2P46721 670 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 PARP6Q2NL67 630 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 BBS9Q3SYG4 887 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 DNAJC21Q5F1R6 531 aaKnown RBP13.27□□□□□ -0.28
SNX1-211ENST00000560829 SPOUT1Q5T280 376 aaKnown RBP13.27□□□□□ -0.28
SNX1-211ENST00000560829 FAXCQ5TGI0 409 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 SNX30Q5VWJ9 437 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 TMCO2Q7Z6W1 182 aaPredicted RBP13.27□□□□□ -0.28
SNX1-211ENST00000560829 DDX53Q86TM3 631 aaKnown RBP13.27□□□□□ -0.28
SNX1-211ENST00000560829 CAND1Q86VP6 1230 aaKnown RBP13.27□□□□□ -0.28
SNX1-211ENST00000560829 FBXO36Q8NEA4 188 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 LRRC39Q96DD0 335 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 TMEM106CQ9BVX2 250 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 SIK2Q9H0K1 926 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 CATSPERBQ9H7T0 1116 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 IL23AQ9NPF7 189 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 BANF1O75531 89 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 MLNP12872 115 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 ATP5DP30049 168 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 PPM1AP35813 382 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 IFI35P80217 286 aaPredicted RBP13.27□□□□□ -0.29
SNX1-211ENST00000560829 RING1Q06587 406 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 EFEMP1Q12805 493 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 MTA1Q13330 715 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 RAB33AQ14088 237 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 ZNF534Q76KX8 674 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 ANKMY2Q8IV38 441 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 ZNF683Q8IZ20 524 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 ZNF567Q8N184 647 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 NETO2Q8NC67 525 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 PDZD8Q8NEN9 1154 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 TSGA13Q96PP4 275 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 CDK5RAP1Q96SZ6 601 aaKnown RBP13.27□□□□□ -0.29
SNX1-211ENST00000560829 VAT1Q99536 393 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 CNOT10Q9H9A5 744 aaKnown RBP13.27□□□□□ -0.29
SNX1-211ENST00000560829 VPS37BQ9H9H4 285 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 STK39Q9UEW8 545 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 NR2E3Q9Y5X4 410 aa13.27□□□□□ -0.29
SNX1-211ENST00000560829 E9PAM4 449 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 SPAG6O75602 509 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 SEC24AO95486 1093 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 APOEP02649 317 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 SRGAP2BP0DMP2 458 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 ACRP10323 421 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 PTPN3P26045 913 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 GCAP28676 217 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 HPDP32754 393 aaPredicted RBP13.26□□□□□ -0.29
SNX1-211ENST00000560829 ELK3P41970 407 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 MMP13P45452 471 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 ATP1A2P50993 1020 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 KPNA1P52294 538 aaPredicted RBP13.26□□□□□ -0.29
SNX1-211ENST00000560829 COG7P83436 770 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 HP1BP3Q5SSJ5 553 aaPredicted RBP13.26□□□□□ -0.29
SNX1-211ENST00000560829 FAM182AQ5T1J6 154 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 PIK3R6Q5UE93 754 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 AFMIDQ63HM1 303 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 RWDD4Q6NW29 188 aaKnown RBP13.26□□□□□ -0.29
SNX1-211ENST00000560829 FAM117BQ6P1L5 589 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 UBE2Q1Q7Z7E8 422 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 ARHGAP12Q8IWW6 846 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 AGGF1Q8N302 714 aaeCLIP13.26□□□□□ -0.29
SNX1-211ENST00000560829 ATP6V0D2Q8N8Y2 350 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 GIPC2Q8TF65 315 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 BTN2A3PQ96KV6 586 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 MYRFLQ96LU7 910 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 ACSS3Q9H6R3 686 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 XAB2Q9HCS7 855 aaKnown RBP13.26□□□□□ -0.29
SNX1-211ENST00000560829 MARCH2Q9P0N8 246 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 PPARGC1AQ9UBK2 798 aaKnown RBP13.26□□□□□ -0.29
SNX1-211ENST00000560829 SLC24A2Q9UI40 661 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 TRHDEQ9UKU6 1024 aa13.26□□□□□ -0.29
SNX1-211ENST00000560829 IGLV3-10A0A075B6K4 115 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 EXOC1LA0A1B0GW35 172 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 C2CD2LO14523 706 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 TLR5O60602 858 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 TBX18O95935 607 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 MOCS2O96007 188 aaPredicted RBP13.25□□□□□ -0.29
SNX1-211ENST00000560829 URODP06132 367 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 ATP2A2P16615 1042 aaKnown RBP13.25□□□□□ -0.29
SNX1-211ENST00000560829 MDH1P40925 334 aaKnown RBP13.25□□□□□ -0.29
SNX1-211ENST00000560829 TUBP50607 506 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 IRAK1P51617 712 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 SARNPP82979 210 aaKnown RBP13.25□□□□□ -0.29
SNX1-211ENST00000560829 C10orf120Q5SQS8 335 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 KLHDC10Q6PID8 442 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 C14orf80Q86SX3 495 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 LRRC49Q8IUZ0 686 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 IGDCC3Q8IVU1 814 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 PALM2Q8IXS6 379 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 RTL3Q8N8U3 475 aaKnown RBP13.25□□□□□ -0.29
SNX1-211ENST00000560829 ZSCAN18Q8TBC5 510 aaPredicted RBP13.25□□□□□ -0.29
SNX1-211ENST00000560829 YME1L1Q96TA2 773 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 PRDM10Q9NQV6 1147 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 RABGEF1Q9UJ41 708 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 MAFFQ9ULX9 164 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 CHMP2BQ9UQN3 213 aa13.25□□□□□ -0.29
SNX1-211ENST00000560829 SRRM3A6NNA2 597 aaPredicted RBP13.25□□□□□ -0.29
SNX1-211ENST00000560829 KCNK1O00180 336 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms