RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 MKS1Q9NXB0 559 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 A0A088AWK7 358 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 MEIS3P2A8K0S8 358 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 NRP1O14786 923 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 TM7SF2O76062 418 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 SERPINA6P08185 405 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 SETSIPP0DME0 302 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 TYK2P29597 1187 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 CCR10P46092 362 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 RAP1GDS1P52306 607 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 KLC1Q07866 573 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 KIAA0319Q5VV43 1072 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 ALKAL1Q6UXT8 129 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 NAPRTQ6XQN6 538 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 RASSF3Q86WH2 238 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 TRIM42Q8IWZ5 723 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 LMNTD2Q8IXW0 634 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 SNX25Q9H3E2 840 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 PIN4Q9Y237 131 aaKnown RBP13.23□□□□□ -0.29
LDLR-207ENST00000558013 TIMM13Q9Y5L4 95 aaPredicted RBP13.23□□□□□ -0.29
LDLR-207ENST00000558013 ARHGAP42A6NI28 874 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 SIN3BO75182 1162 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 MMP3P08254 477 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 AFF1P51825 1210 aaKnown RBP13.23□□□□□ -0.29
LDLR-207ENST00000558013 PPP2R5DQ14738 602 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 RABGAP1LQ5R372 815 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 STEAP4Q687X5 459 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 LRRC8BQ6P9F7 803 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 RNF111Q6ZNA4 994 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 DNAJB3Q8WWF6 145 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 MFSD3Q96ES6 412 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 ZFP42Q96MM3 310 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 MMADHCQ9H3L0 296 aaPredicted RBP13.23□□□□□ -0.29
LDLR-207ENST00000558013 TMEM30AQ9NV96 361 aa13.23□□□□□ -0.29
LDLR-207ENST00000558013 CPSF2Q9P2I0 782 aaKnown RBP13.23□□□□□ -0.29
LDLR-207ENST00000558013 PIRO00625 290 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 BIRC5O15392 142 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 UBTFL6P0CB48 400 aaPredicted RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 ANPEPP15144 967 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 DESP17661 470 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 IDH3AP50213 366 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 SERPINB9P50453 376 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 PPIL2Q13356 520 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 SLC25A52Q3SY17 297 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 CERCAMQ5T4B2 595 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 FAM91A1Q658Y4 838 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 TIFABQ6ZNK6 161 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 PAQR9Q6ZVX9 377 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 MARK2Q7KZI7 788 aaKnown RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 CRYBG2Q8N1P7 616 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 KCNK16Q96T55 309 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 ATP9BO43861 1147 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 MAGEC1O60732 1142 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 PROCP04070 461 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 ZFXP17010 805 aaPredicted RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 NCF2P19878 526 aaPredicted RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 MAP3K7CLP57077 242 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 UNC93AQ86WB7 457 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 ZDHHC17Q8IUH5 632 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 WDR75Q8IWA0 830 aaKnown RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 DCLK2Q8N568 766 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 TTC39CQ8N584 583 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 NPWQ8N729 165 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 MORF4L1Q9UBU8 362 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 EME2A4GXA9 379 aaPredicted RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 FYNP06241 537 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 SAT1P21673 171 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 KYAT1Q16773 422 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 EML3Q32P44 896 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 HSP90AA5PQ58FG0 334 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 KYAT3Q6YP21 454 aaKnown RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 GPRIN1Q7Z2K8 1008 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 NT5DC4Q86YG4 428 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 LRRC52Q8N7C0 313 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 APPL2Q8NEU8 664 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 GPRC5AQ8NFJ5 357 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 MAPK15Q8TD08 544 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 UNKQ9C0B0 810 aaKnown RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 ZNF408Q9H9D4 720 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 SNX15Q9NRS6 342 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 COPG2Q9UBF2 871 aa13.22□□□□□ -0.29
LDLR-207ENST00000558013 G3BP2Q9UN86 482 aaKnown RBP13.22□□□□□ -0.29
LDLR-207ENST00000558013 CCDC189A1A4V9 331 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 ZNF195O14628 629 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 DYNC1LI2O43237 492 aaPredicted RBP13.21□□□□□ -0.29
LDLR-207ENST00000558013 GSTA2P09210 222 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 ZCCHC18P0CG32 403 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 PGAM1P18669 254 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 SP100P23497 879 aaPredicted RBP13.21□□□□□ -0.29
LDLR-207ENST00000558013 CACNA2D1P54289 1103 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 ACTR3P61158 418 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 SARNPP82979 210 aaKnown RBP13.21□□□□□ -0.29
LDLR-207ENST00000558013 ITGA7Q13683 1181 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 DCAF4L1Q3SXM0 396 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 WSCD1Q658N2 575 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 IZUMO2Q6UXV1 221 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 ARCQ7LC44 396 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 B3GALNT2Q8NCR0 500 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 OR6J1Q8NGC5 347 aa13.21□□□□□ -0.29
LDLR-207ENST00000558013 ZNF669Q96BR6 464 aaPredicted RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms