RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 PLCD3Q8N3E9 789 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 RTL3Q8N8U3 475 aaKnown RBP14.95□□□□□ -0.02
SHMT2-210ENST00000553950 TTC16Q8NEE8 873 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 COG1Q8WTW3 980 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 ATP2A3Q93084 1043 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 NXPE3Q969Y0 559 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 CAPZA3Q96KX2 299 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 ZSWIM3Q96MP5 696 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 FERMT1Q9BQL6 677 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 SMG9Q9H0W8 520 aaKnown RBP14.95□□□□□ -0.02
SHMT2-210ENST00000553950 TMEM248Q9NWD8 314 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 XPO7Q9UIA9 1087 aaKnown RBP14.95□□□□□ -0.02
SHMT2-210ENST00000553950 CCL26Q9Y258 94 aa14.95□□□□□ -0.02
SHMT2-210ENST00000553950 KIAA1549LQ6ZVL6 1849 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 DRGXA6NNA5 263 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 MCF2LO15068 1137 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 NCAM2O15394 837 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 GREM1O60565 184 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 CST8O60676 142 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 SRGAP2O75044 1071 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 ADH1CP00326 375 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 MX2P20592 715 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 KLF1Q13351 362 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-210ENST00000553950 AAK1Q2M2I8 961 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 FBXL22Q6P050 247 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 ZNF572Q7Z3I7 529 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-210ENST00000553950 CREG2Q8IUH2 290 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 BBS7Q8IWZ6 715 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 OSCP1Q8WVF1 389 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 P3H4Q92791 437 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 HAUS1Q96CS2 278 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 MYADMQ96S97 322 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 PHF7Q9BWX1 381 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-210ENST00000553950 L2HGDHQ9H9P8 463 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 TMPRSS4Q9NRS4 437 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 NEU3Q9UQ49 428 aa14.94□□□□□ -0.02
SHMT2-210ENST00000553950 GRXCR2A6NFK2 248 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 HEPACAM2A8MVW5 462 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 KRIT1O00522 736 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 PPP1R12AO14974 1030 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-210ENST00000553950 DCLK1O15075 740 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 ZNF185O15231 689 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 ERCC2P18074 760 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 FCARP24071 287 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 SLC6A4P31645 630 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 GGCXP38435 758 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 ZXDBP98169 803 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 FCHO2Q0JRZ9 810 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 MMRN1Q13201 1228 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 PAFAH1B3Q15102 231 aaKnown RBP14.93□□□□□ -0.02
SHMT2-210ENST00000553950 SMAD2Q15796 467 aaKnown RBP14.93□□□□□ -0.02
SHMT2-210ENST00000553950 C6orf118Q5T5N4 469 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 ZNF783Q6ZMS7 281 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 SETD3Q86TU7 594 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-210ENST00000553950 LRRC49Q8IUZ0 686 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 MFSD6LQ8IWD5 586 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 ZNF683Q8IZ20 524 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 MAFAQ8NHW3 353 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-210ENST00000553950 PCDH19Q8TAB3 1148 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 PPM1EQ8WY54 764 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 PRICKLE1Q96MT3 831 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-210ENST00000553950 BRD8Q9H0E9 1235 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 DUS2Q9NX74 493 aaKnown RBP14.93□□□□□ -0.02
SHMT2-210ENST00000553950 MARK1Q9P0L2 795 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 CDH22Q9UJ99 828 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 SHROOM3Q8TF72 1996 aa14.93□□□□□ -0.02
SHMT2-210ENST00000553950 CTAGE15A4D2H0 777 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 FAM72CH0Y354 149 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 CTAGE8P0CG41 777 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 KRT10P13645 584 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 PSMC3P17980 439 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 IL4RP24394 825 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 NDST2P52849 883 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 DYNLT1P63172 113 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 TUBB4BP68371 445 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 LMNB2Q03252 620 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 CDH18Q13634 790 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 PARP15Q460N3 678 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 FAM72AQ5TYM5 149 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 NCBP2-AS2Q69YL0 99 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 FAM72DQ6L9T8 149 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 CTAGE6Q86UF2 777 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 FAM72BQ86X60 149 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 CTAGE4Q8IX94 777 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 CPA6Q8N4T0 437 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 C12orf50Q8NA57 414 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-210ENST00000553950 GRK7Q8WTQ7 553 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 DDI1Q8WTU0 396 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 TMA16Q96EY4 203 aaKnown RBP14.92□□□□□ -0.02
SHMT2-210ENST00000553950 HEMGNQ9BXL5 484 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 SPHK2Q9NRA0 654 aa14.92□□□□□ -0.02
SHMT2-210ENST00000553950 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-210ENST00000553950 CFAP69A5D8W1 941 aa14.91□□□□□ -0.02
SHMT2-210ENST00000553950 HACD1B0YJ81 288 aa14.91□□□□□ -0.02
SHMT2-210ENST00000553950 GFRA2O00451 464 aa14.91□□□□□ -0.02
SHMT2-210ENST00000553950 PHF2O75151 1096 aa14.91□□□□□ -0.02
SHMT2-210ENST00000553950 LUC7L3O95232 432 aaKnown RBP14.91□□□□□ -0.02
SHMT2-210ENST00000553950 AMPD1P23109 780 aa14.91□□□□□ -0.02
SHMT2-210ENST00000553950 OR1E1P30953 314 aa14.91□□□□□ -0.02
SHMT2-210ENST00000553950 CHRNA3P32297 505 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms