RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CHKAP35790 457 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 MXI1P50539 228 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 ARPP19P56211 112 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 NR1H3Q13133 447 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 TMED2Q15363 201 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 ANKS3Q6ZW76 656 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 PHLDB2Q86SQ0 1253 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 ZNF554Q86TJ5 538 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 ZDHHC14Q8IZN3 488 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 LMO3Q8TAP4 145 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 IRGQQ8WZA9 623 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 ABTB1Q969K4 478 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-216ENST00000552909 PTCD3Q96EY7 689 aaKnown RBP7.9□□□□□ -1.14
LIMA1-216ENST00000552909 CCDC97Q96F63 343 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-216ENST00000552909 PTTG2Q9NZH5 202 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 DNAJC12Q9UKB3 198 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 CCDC195A0A1B0GUA6 201 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 WDR27A2RRH5 827 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 CFAP69A5D8W1 941 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 SPAG7O75391 227 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 KRT19P08727 400 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 OR4Q2P0C623 313 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 TROVE2P10155 538 aaKnown RBP eCLIP7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ANPEPP15144 967 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ITIH2P19823 946 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 CRABP2P29373 138 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 CLDN10P78369 228 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ROR1Q01973 937 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ITGA9Q13797 1035 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 RAB33AQ14088 237 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 STAT4Q14765 748 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 SLC8B1Q6J4K2 584 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 C11orf63Q6NUN7 778 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ACAD11Q709F0 780 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 NT5DC4Q86YG4 428 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 KREMEN2Q8NCW0 462 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 TAS1R2Q8TE23 839 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 SEMA4DQ92854 862 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 KHSRPQ92945 711 aaKnown RBP eCLIP7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ELMO3Q96BJ8 720 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 NMD3Q96D46 503 aaKnown RBP7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ARHGEF26Q96DR7 871 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 NSL1Q96IY1 281 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 TMEM209Q96SK2 561 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ZSWIM1Q9BR11 485 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 POMKQ9H5K3 350 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 PCDH18Q9HCL0 1135 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 NPHS2Q9NP85 383 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 UBE2TQ9NPD8 197 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-216ENST00000552909 RAB20Q9NX57 234 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 NDE1Q9NXR1 346 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 NINJ2Q9NZG7 142 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ASIC3Q9UHC3 531 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 AJAP1Q9UKB5 411 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-216ENST00000552909 PCDHB8Q9UN66 801 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 SMG5Q9UPR3 1016 aaKnown RBP7.9□□□□□ -1.15
LIMA1-216ENST00000552909 SH3GLB1Q9Y371 365 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 BACE2Q9Y5Z0 518 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 ALG6Q9Y672 507 aa7.9□□□□□ -1.15
LIMA1-216ENST00000552909 KPNA7A9QM74 516 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 F8W8V4 182 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 CYB561D2O14569 222 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 PMM2O15305 246 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 PRPF4O43172 522 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 RNASEH1O60930 286 aaKnown RBP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 OAZ2O95190 189 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 C4BPAP04003 597 aaKnown RBP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 TMEM191BP0C7N4 346 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 SRGAP2BP0DMP2 458 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 CETN2P41208 172 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 KCNJ1P48048 391 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 TAF6P49848 677 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 SLC18A1P54219 525 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 ADARP55265 1226 aaKnown RBP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 YWHAHQ04917 246 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 ZP2Q05996 745 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 ENPEPQ07075 957 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 TMED1Q13445 227 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 CBX2Q14781 532 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 DUOXA2Q1HG44 320 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 PUS10Q3MIT2 529 aaKnown RBP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 CTXN3Q4LDR2 81 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 WSCD1Q658N2 575 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 RHBDF2Q6PJF5 856 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 OTOAQ7RTW8 1153 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 MAP7D3Q8IWC1 876 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 RHOT2Q8IXI1 618 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 FBXL13Q8NEE6 735 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 APPL2Q8NEU8 664 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 DENND1AQ8TEH3 1009 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 KRT35Q92764 455 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF707Q96C28 371 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-216ENST00000552909 SNF8Q96H20 258 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 SMC6Q96SB8 1091 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 STK33Q9BYT3 514 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 THAP2Q9H0W7 228 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 EPB41L1Q9H4G0 881 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 CYLDQ9NQC7 956 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 ARL8BQ9NVJ2 186 aa7.89□□□□□ -1.15
LIMA1-216ENST00000552909 DNAJC17Q9NVM6 304 aaKnown RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms