RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 ABCG4Q9H172 646 aa15.04■□□□□ -0
VPS29-209ENST00000551655 PANK4Q9NVE7 773 aa15.04■□□□□ -0
VPS29-209ENST00000551655 ARHGAP20Q9P2F6 1191 aa15.04■□□□□ -0
VPS29-209ENST00000551655 SCML1Q9UN30 329 aa15.04■□□□□ -0
VPS29-209ENST00000551655 MAN2B2Q9Y2E5 1009 aa15.04■□□□□ -0
VPS29-209ENST00000551655 ENTPD2Q9Y5L3 495 aa15.04■□□□□ -0
VPS29-209ENST00000551655 FRMD3A2A2Y4 597 aa15.03■□□□□ -0
VPS29-209ENST00000551655 CLIC2O15247 247 aa15.03■□□□□ -0
VPS29-209ENST00000551655 LATO43561 262 aa15.03■□□□□ -0
VPS29-209ENST00000551655 POLR2EP19388 210 aaKnown RBP15.03■□□□□ -0
VPS29-209ENST00000551655 ATICP31939 592 aa15.03■□□□□ -0
VPS29-209ENST00000551655 ALCAMQ13740 583 aa15.03■□□□□ -0
VPS29-209ENST00000551655 TGIF1Q15583 401 aa15.03■□□□□ -0
VPS29-209ENST00000551655 IGFBP7Q16270 282 aa15.03■□□□□ -0
VPS29-209ENST00000551655 BMT2Q1RMZ1 405 aa15.03■□□□□ -0
VPS29-209ENST00000551655 IGF2-ASQ6U949 168 aa15.03■□□□□ -0
VPS29-209ENST00000551655 USP53Q70EK8 1073 aa15.03■□□□□ -0
VPS29-209ENST00000551655 CCDC186Q7Z3E2 898 aa15.03■□□□□ -0
VPS29-209ENST00000551655 TADA2BQ86TJ2 420 aa15.03■□□□□ -0
VPS29-209ENST00000551655 ARRDC3Q96B67 414 aa15.03■□□□□ -0
VPS29-209ENST00000551655 CCDC97Q96F63 343 aaPredicted RBP15.03■□□□□ -0
VPS29-209ENST00000551655 MRGPRX3Q96LB0 322 aa15.03■□□□□ -0
VPS29-209ENST00000551655 FZD4Q9ULV1 537 aa15.03■□□□□ -0
VPS29-209ENST00000551655 TBC1D3DA0A087WVF3 549 aa15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3IA0A087WXS9 549 aa15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3EA0A087X179 549 aa15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3KA0A087X1G2 549 aa15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3FA6NER0 549 aaPredicted RBP15.02■□□□□ -0
VPS29-209ENST00000551655 TTC34A8MYJ7 566 aa15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3LB9A6J9 549 aa15.02■□□□□ -0
VPS29-209ENST00000551655 RNASEH1O60930 286 aaKnown RBP15.02■□□□□ -0
VPS29-209ENST00000551655 TNFSF15O95150 251 aa15.02■□□□□ -0
VPS29-209ENST00000551655 ATP5BP06576 529 aaKnown RBP15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3HP0C7X1 549 aa15.02■□□□□ -0
VPS29-209ENST00000551655 BIRC3Q13489 604 aa15.02■□□□□ -0
VPS29-209ENST00000551655 HNRNPA1L2Q32P51 320 aaKnown RBP15.02■□□□□ -0
VPS29-209ENST00000551655 C9orf64Q5T6V5 341 aa15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3GQ6DHY5 549 aa15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3CQ6IPX1 549 aa15.02■□□□□ -0
VPS29-209ENST00000551655 SPOPLQ6IQ16 392 aa15.02■□□□□ -0
VPS29-209ENST00000551655 SND1Q7KZF4 910 aaKnown RBP eCLIP15.02■□□□□ -0
VPS29-209ENST00000551655 RSRC2Q7L4I2 434 aaKnown RBP15.02■□□□□ -0
VPS29-209ENST00000551655 TBC1D3Q8IZP1 549 aaPredicted RBP15.02■□□□□ -0
VPS29-209ENST00000551655 CRYBG2Q8N1P7 616 aa15.02■□□□□ -0
VPS29-209ENST00000551655 IFI44Q8TCB0 444 aa15.02■□□□□ -0
VPS29-209ENST00000551655 CLIC5Q9NZA1 410 aa15.02■□□□□ -0
VPS29-209ENST00000551655 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.02■□□□□ -0
VPS29-209ENST00000551655 TJP2Q9UDY2 1190 aa15.02■□□□□ -0
VPS29-209ENST00000551655 STK17AQ9UEE5 414 aa15.02■□□□□ -0
VPS29-209ENST00000551655 SEPT3Q9UH03 358 aa15.02■□□□□ -0
VPS29-209ENST00000551655 NBASA2RRP1 2371 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 RTN2O75298 545 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 NEBLO76041 1014 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 VNN1O95497 513 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 GOT1P17174 413 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 CTSOP43234 321 aaPredicted RBP15.01□□□□□ -0.01
VPS29-209ENST00000551655 NUMBP49757 651 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 PSEN1P49768 467 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 ASIC1P78348 528 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 PDE4CQ08493 712 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 SFSWAPQ12872 951 aaKnown RBP15.01□□□□□ -0.01
VPS29-209ENST00000551655 HS1BP3Q53T59 392 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 RFWD3Q6PCD5 774 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.01□□□□□ -0.01
VPS29-209ENST00000551655 SV2BQ7L1I2 683 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 PTRH1Q86Y79 214 aaKnown RBP15.01□□□□□ -0.01
VPS29-209ENST00000551655 STK40Q8N2I9 435 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 ZNF276Q8N554 614 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 NDRG1Q92597 394 aaKnown RBP15.01□□□□□ -0.01
VPS29-209ENST00000551655 SGF29Q96ES7 293 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 TMA16Q96EY4 203 aaKnown RBP15.01□□□□□ -0.01
VPS29-209ENST00000551655 CYFIP2Q96F07 1278 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 PSMG3-AS1Q96PY0 264 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 FAM129BQ96TA1 746 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 EPN3Q9H201 632 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 VRTNQ9H8Y1 702 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 KIAA1586Q9HCI6 787 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 AGPAT3Q9NRZ7 376 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 CYTH4Q9UIA0 394 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 INTS6Q9UL03 887 aaKnown RBP15.01□□□□□ -0.01
VPS29-209ENST00000551655 ATXN7L1Q9ULK2 861 aaPredicted RBP15.01□□□□□ -0.01
VPS29-209ENST00000551655 STRIP2Q9ULQ0 834 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 USP3Q9Y6I4 520 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 CREBBPQ92793 2442 aa15.01□□□□□ -0.01
VPS29-209ENST00000551655 ZFC3H1O60293 1989 aaKnown RBP15□□□□□ -0.01
VPS29-209ENST00000551655 GOLGA6L7A0A1B0GV03 622 aa15□□□□□ -0.01
VPS29-209ENST00000551655 BLACEA4D250 179 aa15□□□□□ -0.01
VPS29-209ENST00000551655 CLEC18AA5D8T8 446 aa15□□□□□ -0.01
VPS29-209ENST00000551655 HAX1O00165 279 aa15□□□□□ -0.01
VPS29-209ENST00000551655 TGFB1I1O43294 461 aa15□□□□□ -0.01
VPS29-209ENST00000551655 PIAS2O75928 621 aa15□□□□□ -0.01
VPS29-209ENST00000551655 GP1BAP07359 652 aa15□□□□□ -0.01
VPS29-209ENST00000551655 DRD3P35462 400 aa15□□□□□ -0.01
VPS29-209ENST00000551655 CSKP41240 450 aa15□□□□□ -0.01
VPS29-209ENST00000551655 CYP4F2P78329 520 aa15□□□□□ -0.01
VPS29-209ENST00000551655 NCOA4Q13772 614 aa15□□□□□ -0.01
VPS29-209ENST00000551655 DRAP1Q14919 205 aaPredicted RBP15□□□□□ -0.01
VPS29-209ENST00000551655 TRIP4Q15650 581 aaPredicted RBP15□□□□□ -0.01
VPS29-209ENST00000551655 CDKN3Q16667 212 aa15□□□□□ -0.01
VPS29-209ENST00000551655 SKIDA1Q1XH10 827 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms