RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NOL9Q5SY16 702 aaKnown RBP15.35■□□□□ 0.05
CUX1-214ENST00000550008 RGMBQ6NW40 437 aa15.35■□□□□ 0.05
CUX1-214ENST00000550008 TRIML2Q8N7C3 387 aa15.35■□□□□ 0.05
CUX1-214ENST00000550008 MRPL1Q9BYD6 325 aaKnown RBP15.35■□□□□ 0.05
CUX1-214ENST00000550008 EML4Q9HC35 981 aaKnown RBP15.35■□□□□ 0.05
CUX1-214ENST00000550008 VCX3AQ9NNX9 186 aa15.35■□□□□ 0.05
CUX1-214ENST00000550008 LSM7Q9UK45 103 aaKnown RBP15.35■□□□□ 0.05
CUX1-214ENST00000550008 MYBPHLA2RUH7 354 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 DPYSL4O14531 572 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 MDM4O15151 490 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 ITGB6P18564 788 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 PGAM1P18669 254 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 YWHAQP27348 245 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 CLCNKBP51801 687 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 LILRA4P59901 499 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 GAD2Q05329 585 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 RAD51Q06609 339 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 CAPRIN1Q14444 709 aaKnown RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 CYTH1Q15438 398 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 SPRYD7Q5W111 196 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 EXOC2Q96KP1 924 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 DUSP16Q9BY84 665 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 VPS28Q9UK41 221 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 DCXO43602 365 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 MTA2O94776 668 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 SEC24DO94855 1032 aaPredicted RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 ATP6V1G2O95670 118 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 RAP1GAP2Q684P5 730 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 SZRD1Q7Z422 152 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 SUFUQ9UMX1 484 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 PCDHGC3Q9UN70 934 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 PKP3Q9Y446 797 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 NCAM2O15394 837 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 MFSD11O43934 449 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 KPNA6O60684 536 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 HNRNPCL1O60812 293 aaKnown RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 SRP72O76094 671 aaKnown RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 HMOX2P30519 316 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 GPD2P43304 727 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 CTU1Q7Z7A3 348 aaKnown RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 SPDYE1Q8NFV5 336 aaPredicted RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 NKD2Q969F2 451 aaPredicted RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 ATP11BQ9Y2G3 1177 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 MYH15Q9Y2K3 1946 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 KIF1CO43896 1103 aaKnown RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 PDE5AO76074 875 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 NAGLUP54802 743 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 HADHBP55084 474 aaKnown RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 PARP6Q2NL67 630 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 ZNF572Q7Z3I7 529 aaPredicted RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 ATAD1Q8NBU5 361 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 EBNA1BP2Q99848 306 aaKnown RBP15.34■□□□□ 0.05
CUX1-214ENST00000550008 NMRK2Q9NPI5 230 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 MARCH2Q9P0N8 246 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 TMEM59LQ9UK28 342 aa15.34■□□□□ 0.05
CUX1-214ENST00000550008 E2F6O75461 281 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 ZMPSTE24O75844 475 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 OXCT1P55809 520 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 SH3D19Q5HYK7 790 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 SEL1L3Q68CR1 1132 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 C16orf59Q7L2K0 433 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 LGI2Q8N0V4 545 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 DDI1Q8WTU0 396 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 TUBGCP3Q96CW5 907 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 MAN1C1Q9NR34 630 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 NSMCE4AQ9NXX6 385 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 LMCD1Q9NZU5 365 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 SMIM35A0A1B0GVV1 85 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 CTBP1Q13363 440 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.33■□□□□ 0.04
CUX1-214ENST00000550008 AGAP9Q5VTM2 703 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 MRNIPQ6NTE8 343 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 USP13Q92995 863 aaPredicted RBP15.33■□□□□ 0.04
CUX1-214ENST00000550008 OXNAD1Q96HP4 312 aaPredicted RBP15.33■□□□□ 0.04
CUX1-214ENST00000550008 CATSPER2Q96P56 530 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 OMDQ99983 421 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 CAB39LQ9H9S4 337 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 SYBUQ9NX95 663 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 TRPM5Q9NZQ8 1165 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 PADI3Q9ULW8 664 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 GON4LQ3T8J9 2241 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 C2CD4BA6NLJ0 364 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 TMEM63AO94886 807 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 CYBBP04839 570 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 RHOCP08134 193 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 PTPN4P29074 926 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 CERCAMQ5T4B2 595 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 THEMIS2Q5TEJ8 643 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 TIGD7Q6NT04 549 aaPredicted RBP15.33■□□□□ 0.04
CUX1-214ENST00000550008 ST13P4Q8IZP2 240 aaPredicted RBP15.33■□□□□ 0.04
CUX1-214ENST00000550008 TMEM86AQ8N2M4 240 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 TDRD5Q8NAT2 981 aaKnown RBP15.33■□□□□ 0.04
CUX1-214ENST00000550008 DDX1Q92499 740 aaKnown RBP15.33■□□□□ 0.04
CUX1-214ENST00000550008 SEPT8Q92599 483 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 CENPTQ96BT3 561 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 KLHL5Q96PQ7 755 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 ZNF112Q9UJU3 913 aa15.33■□□□□ 0.04
CUX1-214ENST00000550008 ADRA1BP35368 520 aa15.32■□□□□ 0.04
CUX1-214ENST00000550008 RNASEH2BQ5TBB1 312 aaKnown RBP15.32■□□□□ 0.04
CUX1-214ENST00000550008 OTOAQ7RTW8 1153 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms