RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 RSPO2Q6UXX9 243 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-215ENST00000547672 CCDC149Q6ZUS6 474 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 TMEM173Q86WV6 379 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-215ENST00000547672 GLIS1Q8NBF1 620 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 VWCEQ96DN2 955 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 P2RY11Q96G91 374 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 RAD9AQ99638 391 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 NAT9Q9BTE0 207 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 PRDM12Q9H4Q4 367 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 CYP4F11Q9HBI6 524 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 RXFP1Q9HBX9 757 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 PRDM10Q9NQV6 1147 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 NINJ2Q9NZG7 142 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 SFMBT1Q9UHJ3 866 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 LZTS1Q9Y250 596 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 PLXNA3P51805 1871 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 TLDC2A0PJX2 215 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 RNF103O00237 685 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 C2CD2LO14523 706 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 TRDMT1O14717 391 aaKnown RBP13.82□□□□□ -0.2
PTCH1-215ENST00000547672 MFSD11O43934 449 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 TLR5O60602 858 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 CDH16O75309 829 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 GJB5O95377 273 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 ACSL3O95573 720 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 APRTP07741 180 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 RHOQP17081 205 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 GARSP41250 739 aaKnown RBP13.82□□□□□ -0.2
PTCH1-215ENST00000547672 SEMA5AQ13591 1074 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 KLHL38Q2WGJ6 581 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 SDHAF4Q5VUM1 108 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 FAM117BQ6P1L5 589 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 OTOP2Q7RTS6 562 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 PID1Q7Z2X4 250 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 CCDC13Q8IYE1 715 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 ZBED8Q8IZ13 594 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 GIPC2Q8TF65 315 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 NSMCE1Q8WV22 266 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 FATE1Q969F0 183 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 EMILIN2Q9BXX0 1053 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 VPS37BQ9H9H4 285 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 ETNK1Q9HBU6 452 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 IGSF9Q9P2J2 1179 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 SLC24A2Q9UI40 661 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 SLC4A7Q9Y6M7 1214 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 DNAH12Q6ZR08 3092 aa13.82□□□□□ -0.2
PTCH1-215ENST00000547672 SLC12A8A0AV02 714 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 E9PAM4 449 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 FAM72CH0Y354 149 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 NEBLO76041 1014 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 FGF19O95750 216 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 IGLV3-27P01718 113 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 ACRP10323 421 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 CTSAP10619 480 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 PFKLP17858 780 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 NR1D1P20393 614 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 MMP13P45452 471 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 GPR15P49685 360 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 USP46P62068 366 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 SKOR1P84550 965 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 TERF2Q15554 542 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 FAM72AQ5TYM5 149 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 MANEALQ5VSG8 457 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 ARMC3Q5W041 872 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 FAM72DQ6L9T8 149 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 KDM7AQ6ZMT4 941 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 PRUNE1Q86TP1 453 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 FAM72BQ86X60 149 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 TDRPQ86YL5 185 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 ELMOD1Q8N336 334 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 RTL3Q8N8U3 475 aaKnown RBP13.81□□□□□ -0.2
PTCH1-215ENST00000547672 CCDC110Q8TBZ0 833 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 CLP1Q92989 425 aaKnown RBP13.81□□□□□ -0.2
PTCH1-215ENST00000547672 ARL8AQ96BM9 186 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 PLD4Q96BZ4 506 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 LGMNQ99538 433 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 HTATIP2Q9BUP3 242 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 ZYG11BQ9C0D3 744 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 EPB41L4BQ9H329 900 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 C10orf88Q9H8K7 445 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 SENP1Q9P0U3 644 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 KLHL8Q9P2G9 620 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-215ENST00000547672 HCSTQ9UBK5 93 aa13.81□□□□□ -0.2
PTCH1-215ENST00000547672 ZMYND8Q9ULU4 1186 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-215ENST00000547672 MAGED2Q9UNF1 606 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-215ENST00000547672 MAGEB16A2A368 324 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 ARHGAP42A6NI28 874 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 FGF18O76093 207 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 LATS1O95835 1130 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 ADH1AP07327 375 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 ITGB8P26012 769 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 STX2P32856 288 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 YBEYP58557 167 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-215ENST00000547672 UBE3AQ05086 875 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 BBS9Q3SYG4 887 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 TEX44Q53QW1 395 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 TTMPQ5BVD1 217 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 LGSNQ5TDP6 509 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 RASIP1Q5U651 963 aa13.8□□□□□ -0.2
PTCH1-215ENST00000547672 ELMSAN1Q6PJG2 1045 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms