RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 HDAC6Q9UBN7 1215 aa3.29□□□□□ -1.88
CD44-234ENST00000531873 TESQ9UGI8 421 aaKnown RBP3.29□□□□□ -1.88
CD44-234ENST00000531873 AMFRQ9UKV5 643 aa3.29□□□□□ -1.88
CD44-234ENST00000531873 VPS4AQ9UN37 437 aa3.29□□□□□ -1.88
CD44-234ENST00000531873 CAMK2AQ9UQM7 478 aa3.29□□□□□ -1.88
CD44-234ENST00000531873 KDM3AQ9Y4C1 1321 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 SH2D7A6NKC9 451 aaPredicted RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 PRYO14603 147 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 TNPO2O14787 897 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 ANP32CO43423 234 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 TNFSF14O43557 240 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 AHCYL1O43865 530 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 PEX1O43933 1283 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 DOK2O60496 412 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 FZD7O75084 574 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 ZBED4O75132 1171 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 PTP4A3O75365 173 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 URI1O94763 535 aaPredicted RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 PDE8BO95263 885 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 CLEC3BP05452 202 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 HSP90AA1P07900 732 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 WEE2P0C1S8 567 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 APEHP13798 732 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 PRPH2P23942 346 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 CHMP24386 653 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 NDUFS1P28331 727 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 DUSP1P28562 367 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 CYP2C18P33260 490 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 STAT1P42224 750 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 STAT6P42226 847 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 PCP4P48539 62 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 JAK3P52333 1124 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 PDE1AP54750 535 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 DRG2P55039 364 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 SEC23BQ15437 767 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 NFIL3Q16649 462 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 FAM69AQ5T7M9 428 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 ABHD17BQ5VST6 288 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 LAIR1Q6GTX8 287 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 INO80CQ6PI98 192 aaPredicted RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 KRBA2Q6ZNG9 492 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 RNF207Q6ZRF8 634 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 PARS2Q7L3T8 475 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 RTL10Q7L3V2 364 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 ZNF551Q7Z340 670 aaPredicted RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 PXKQ7Z7A4 578 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 MRGPREQ86SM8 312 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 PEG10Q86TG7 708 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 MON1AQ86VX9 555 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 SFTPA1Q8IWL2 248 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 SCN4BQ8IWT1 228 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 LAS2Q8IYD9 372 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 ADGRF3Q8IZF5 1079 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 EXD3Q8N9H8 876 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 NGDNQ8NEJ9 315 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 NFKBIDQ8NI38 313 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 RUFY2Q8WXA3 655 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 DVL3Q92997 716 aaPredicted RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 NR1H4Q96RI1 486 aaPredicted RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 MMS19Q96T76 1030 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 CINPQ9BW66 212 aaPredicted RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 RNF26Q9BY78 433 aaPredicted RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 WDR11Q9BZH6 1224 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 INTS2Q9H0H0 1204 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 PCED1AQ9H1Q7 454 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 ARHGEF3Q9NR81 526 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 SNX15Q9NRS6 342 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 KRT84Q9NSB2 600 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 SERTAD4Q9NUC0 356 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 POLG2Q9UHN1 485 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 CNOT7Q9UIV1 285 aaKnown RBP3.28□□□□□ -1.88
CD44-234ENST00000531873 FZD4Q9ULV1 537 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 GPR34Q9UPC5 381 aa3.28□□□□□ -1.88
CD44-234ENST00000531873 MAST3O60307 1309 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 NPIPB15A6NHN6 443 aaPredicted RBP3.27□□□□□ -1.89
CD44-234ENST00000531873 LINC00473A8K010 186 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 ZNF213O14771 459 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 LDLRAD4O15165 306 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 TGFB1I1O43294 461 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 FIBPO43427 364 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 TULP3O75386 442 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 METTL18O95568 372 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 SCGB1D1O95968 90 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 PEX11BO96011 259 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 DLDP09622 509 aaKnown RBP3.27□□□□□ -1.89
CD44-234ENST00000531873 MYCLP12524 364 aaPredicted RBP3.27□□□□□ -1.89
CD44-234ENST00000531873 ATF7P17544 494 aaPredicted RBP3.27□□□□□ -1.89
CD44-234ENST00000531873 SFPQP23246 707 aaKnown RBP eCLIP3.27□□□□□ -1.89
CD44-234ENST00000531873 PRKCHP24723 683 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 PTGS2P35354 604 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 HARS2P49590 506 aaKnown RBP3.27□□□□□ -1.89
CD44-234ENST00000531873 AGTR2P50052 363 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 SLC37A1P57057 533 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 SHC2P98077 582 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 DGCR2P98153 550 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 CFHR3Q02985 330 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 CAMK1Q14012 370 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 GXYLT1Q4G148 440 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 ZNF766Q5HY98 468 aa3.27□□□□□ -1.89
CD44-234ENST00000531873 SH2D4BQ5SQS7 431 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms