RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 HNRNPA1L2Q32P51 320 aaKnown RBP24.47■■□□□ 1.51
CPSF1-202ENST00000527827 TMEM270Q6UE05 265 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 TSG101Q99816 390 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 ARMCX3Q9UH62 379 aaPredicted RBP24.47■■□□□ 1.51
CPSF1-202ENST00000527827 SCML1Q9UN30 329 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 NCKAP1Q9Y2A7 1128 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 FAM149AA5PLN7 773 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 TRIM49BA6NDI0 452 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 FYNP06241 537 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 CSKP41240 450 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 GALCP54803 685 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 RPS24P62847 133 aaKnown RBP24.46■■□□□ 1.51
CPSF1-202ENST00000527827 CYP4F3Q08477 520 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 CNGA2Q16280 664 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 ZNF658Q5TYW1 1059 aaPredicted RBP24.46■■□□□ 1.51
CPSF1-202ENST00000527827 ADAT2Q7Z6V5 191 aaKnown RBP24.46■■□□□ 1.51
CPSF1-202ENST00000527827 ZNF557Q8N988 423 aaPredicted RBP24.46■■□□□ 1.51
CPSF1-202ENST00000527827 HJURPQ8NCD3 748 aaPredicted RBP24.46■■□□□ 1.51
CPSF1-202ENST00000527827 FCRL2Q96LA5 508 aaPredicted RBP24.46■■□□□ 1.51
CPSF1-202ENST00000527827 SLC6A18Q96N87 628 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 EBF2Q9HAK2 575 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 GDPD2Q9HCC8 539 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 SCUBE2Q9NQ36 999 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 RMND1Q9NWS8 449 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 FBXL12Q9NXK8 326 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 NYNRINQ9P2P1 1898 aaKnown RBP24.46■■□□□ 1.51
CPSF1-202ENST00000527827 KNTC1P50748 2209 aa24.46■■□□□ 1.51
CPSF1-202ENST00000527827 COL5A1P20908 1838 aaPredicted RBP24.45■■□□□ 1.5
CPSF1-202ENST00000527827 A0A1W2PPC4 97 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 FAM47DPA6NHR8 397 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 C10orf142B7Z368 130 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 VILLO15195 856 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 CALCAP01258 141 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 ASLP04424 464 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 BRD2P25440 801 aaKnown RBP24.45■■□□□ 1.5
CPSF1-202ENST00000527827 FMO5P49326 533 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 ST8SIA6P61647 398 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 RACK1P63244 317 aaKnown RBP24.45■■□□□ 1.5
CPSF1-202ENST00000527827 DHX40Q8IX18 779 aaKnown RBP24.45■■□□□ 1.5
CPSF1-202ENST00000527827 GANCQ8TET4 914 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 KAT5Q92993 513 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 HSFY1Q96LI6 401 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 PCDHB4Q9Y5E5 795 aa24.45■■□□□ 1.5
CPSF1-202ENST00000527827 A0A1B0GTQ1 180 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 M0QYV0 167 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 MID1O15344 667 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 DFNA5O60443 496 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 WNT1P04628 370 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 ARID5BQ14865 1188 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 CCDC157Q569K6 752 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 FSCBQ5H9T9 825 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 C9orf64Q5T6V5 341 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 NCEH1Q6PIU2 408 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 DHRS13Q6UX07 377 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 MMS22LQ6ZRQ5 1243 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 ACE2Q9BYF1 805 aaPredicted RBP24.44■■□□□ 1.5
CPSF1-202ENST00000527827 NEUROG2Q9H2A3 272 aa24.44■■□□□ 1.5
CPSF1-202ENST00000527827 A0A1W2PP55 124 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 FBXO21O94952 628 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 CTSOP43234 321 aaPredicted RBP24.43■■□□□ 1.5
CPSF1-202ENST00000527827 C21orf59P57076 290 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 LRRC63Q05C16 580 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 CST6Q15828 149 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 PRAMEF14Q5SWL7 426 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 FMR1NBQ8N0W7 255 aaPredicted RBP24.43■■□□□ 1.5
CPSF1-202ENST00000527827 CARNMT1Q8N4J0 409 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 KDM1BQ8NB78 822 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 ENGASEQ8NFI3 743 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 DQX1Q8TE96 717 aaKnown RBP24.43■■□□□ 1.5
CPSF1-202ENST00000527827 SLC39A13Q96H72 371 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 CCDC34Q96HJ3 373 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 NT5C1BQ96P26 610 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 GSDMAQ96QA5 445 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 DDX50Q9BQ39 737 aaKnown RBP24.43■■□□□ 1.5
CPSF1-202ENST00000527827 MIS12Q9H081 205 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 NUCKS1Q9H1E3 243 aaKnown RBP24.43■■□□□ 1.5
CPSF1-202ENST00000527827 FTSJ1Q9UET6 329 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 ADAMTS1Q9UHI8 967 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 ERVW-1Q9UQF0 538 aa24.43■■□□□ 1.5
CPSF1-202ENST00000527827 TTC34A8MYJ7 566 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 RNASEH1O60930 286 aaKnown RBP24.42■■□□□ 1.5
CPSF1-202ENST00000527827 KCNJ12Q14500 433 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 SHBQ15464 509 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 STILQ15468 1287 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 INAVAQ3KP66 663 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 MS4A13Q5J8X5 152 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 PITRM1Q5JRX3 1037 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 GATAD2AQ86YP4 633 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 MMAAQ8IVH4 418 aaKnown RBP24.42■■□□□ 1.5
CPSF1-202ENST00000527827 CFAP52Q8N1V2 620 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 PDCD7Q8N8D1 485 aaKnown RBP24.42■■□□□ 1.5
CPSF1-202ENST00000527827 LMO3Q8TAP4 145 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 LRIG1Q96JA1 1093 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 ELF4Q99607 663 aaPredicted RBP24.42■■□□□ 1.5
CPSF1-202ENST00000527827 NAALADL1Q9UQQ1 740 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 TLR6Q9Y2C9 796 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 ATP6V1DQ9Y5K8 247 aa24.42■■□□□ 1.5
CPSF1-202ENST00000527827 ITIH6Q6UXX5 1313 aa24.41■■□□□ 1.5
CPSF1-202ENST00000527827 TARSL2A2RTX5 802 aaKnown RBP24.41■■□□□ 1.5
CPSF1-202ENST00000527827 TYW5A2RUC4 315 aaKnown RBP24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms