RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RBM10P98175 930 aaKnown RBP21.64■■□□□ 1.05
VPS28-208ENST00000527797 GPS1Q13098 491 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 ARTNQ5T4W7 220 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 FBXL22Q6P050 247 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 ZDHHC24Q6UX98 284 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 ADGRD2Q7Z7M1 963 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 CHSY1Q86X52 802 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 NPWQ8N729 165 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 RTP4Q96DX8 246 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 FERMT1Q9BQL6 677 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 ZYG11BQ9C0D3 744 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 ZDHHC18Q9NUE0 388 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 ZDHHC7Q9NXF8 308 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 HCFC2Q9Y5Z7 792 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 GBF1Q92538 1859 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 IGLV3-10A0A075B6K4 115 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 A0A1W2PRU2 124 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 SPDYE4A6NLX3 237 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 WASH4PA8MWX3 477 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 ZNF189O75820 626 aaPredicted RBP21.63■■□□□ 1.05
VPS28-208ENST00000527797 RHOQP17081 205 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 PFKLP17858 780 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 TACR2P21452 398 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 RPL22P35268 128 aaKnown RBP21.63■■□□□ 1.05
VPS28-208ENST00000527797 TNNT3P45378 269 aaPredicted RBP21.63■■□□□ 1.05
VPS28-208ENST00000527797 CAV1Q03135 178 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 P3H1Q32P28 736 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 IZUMO3Q5VZ72 239 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 HEATR6Q6AI08 1181 aaKnown RBP21.63■■□□□ 1.05
VPS28-208ENST00000527797 NADSYN1Q6IA69 706 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 DENND1CQ8IV53 801 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 TDHQ8IZJ6 230 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 RTL3Q8N8U3 475 aaKnown RBP21.63■■□□□ 1.05
VPS28-208ENST00000527797 MAB21L3Q8N8X9 362 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 LEMD2Q8NC56 503 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 NETO2Q8NC67 525 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 CCNYQ8ND76 341 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 GDPD5Q8WTR4 605 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 LRRN4Q8WUT4 740 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 CAVIN3Q969G5 261 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 SLC22A12Q96S37 553 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 BRD8Q9H0E9 1235 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 PRDM12Q9H4Q4 367 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 HCFC1R1Q9NWW0 138 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 SMPD4Q9NXE4 827 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 DONSONQ9NYP3 566 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 MPP6Q9NZW5 540 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 ANAPC5Q9UJX4 755 aa21.63■■□□□ 1.05
VPS28-208ENST00000527797 GOLGA6L7A0A1B0GV03 622 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 DRGXA6NNA5 263 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 F5H5T6 163 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 NDC80O14777 642 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 FAM153BP0C7A2 387 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 IRF1P10914 325 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 CORO1AP31146 461 aaKnown RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 ITGA8P53708 1063 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 EPHA5P54756 1037 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 PRKD1Q15139 912 aaPredicted RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 FAM153CQ494X1 144 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 FBXO25Q8TCJ0 367 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 GDAP1L1Q96MZ0 367 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 RPRD1AQ96P16 312 aaPredicted RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 FMO2Q99518 471 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 LGMNQ99538 433 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 ZNF446Q9NWS9 450 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 DNMT3BQ9UBC3 853 aaKnown RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 MTRF1LQ9UGC7 380 aaKnown RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 FAM153AQ9UHL3 310 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 TRAV19A0A0A6YYK7 116 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 DNALI1O14645 258 aaPredicted RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 SMAD3P84022 425 aaKnown RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 GALNT2Q10471 571 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 AP1B1Q10567 949 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 DUSP6Q16828 381 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 TP53INP2Q8IXH6 220 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 HTR3CQ8WXA8 447 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 ZFRQ96KR1 1074 aaKnown RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 PRKD2Q9BZL6 878 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 KLC2Q9H0B6 622 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 PAK5Q9P286 719 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 TPX2Q9ULW0 747 aaKnown RBP21.62■■□□□ 1.05
VPS28-208ENST00000527797 CPQQ9Y646 472 aa21.62■■□□□ 1.05
VPS28-208ENST00000527797 KLKB1P03952 638 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 RHOP08100 348 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 POU2F2P09086 479 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 GJA1P17302 382 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 NRIP1P48552 1158 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 SLC7A9P82251 487 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 C4orf22Q6V702 233 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 HDXQ7Z353 690 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 PCGF5Q86SE9 256 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 NLRP14Q86W24 1093 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 LGI2Q8N0V4 545 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 IGSF8Q969P0 613 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 CELF6Q96J87 481 aaKnown RBP21.61■■□□□ 1.05
VPS28-208ENST00000527797 DDX50Q9BQ39 737 aaKnown RBP21.61■■□□□ 1.05
VPS28-208ENST00000527797 TMEM248Q9NWD8 314 aa21.61■■□□□ 1.05
VPS28-208ENST00000527797 AGO1Q9UL18 857 aaKnown RBP21.61■■□□□ 1.05
VPS28-208ENST00000527797 CCDC195A0A1B0GUA6 201 aa21.6■■□□□ 1.05
VPS28-208ENST00000527797 EPOPA6NHQ4 379 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms