RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 PRCCQ92733 491 aaPredicted RBP19.47■□□□□ 0.71
VPS28-207ENST00000526977 C9orf72Q96LT7 481 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 KCTD15Q96SI1 283 aaPredicted RBP19.47■□□□□ 0.71
VPS28-207ENST00000526977 USP29Q9HBJ7 922 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 NUDT5Q9UKK9 219 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 SHOC2Q9UQ13 582 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 TLR6Q9Y2C9 796 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 HEY1Q9Y5J3 304 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 ZNF638Q14966 1978 aaKnown RBP19.47■□□□□ 0.71
VPS28-207ENST00000526977 H7C0C1 242 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 RGS16O15492 202 aaPredicted RBP19.47■□□□□ 0.71
VPS28-207ENST00000526977 SLC2A3P11169 496 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 SLCO1A2P46721 670 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 ATP5OP48047 213 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 KPNA1P52294 538 aaPredicted RBP19.47■□□□□ 0.71
VPS28-207ENST00000526977 NRLP54845 237 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 PPP2R2AP63151 447 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 IFI35P80217 286 aaPredicted RBP19.47■□□□□ 0.71
VPS28-207ENST00000526977 GUCY1A3Q02108 690 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 AUHQ13825 339 aaKnown RBP19.47■□□□□ 0.71
VPS28-207ENST00000526977 PPP2R5DQ14738 602 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 HECTD3Q5T447 861 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 KLHDC10Q6PID8 442 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 ELMSAN1Q6PJG2 1045 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 LEKR1Q6ZMV7 388 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 SAYSD1Q9NPB0 183 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 MYO16Q9Y6X6 1858 aa19.47■□□□□ 0.71
VPS28-207ENST00000526977 ATP5C1P36542 298 aaKnown RBP19.46■□□□□ 0.71
VPS28-207ENST00000526977 MDH1P40925 334 aaKnown RBP19.46■□□□□ 0.71
VPS28-207ENST00000526977 EFEMP1Q12805 493 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 TNFAIP8L3Q5GJ75 292 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 PPIL6Q8IXY8 311 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 NAT8LQ8N9F0 302 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 SLC22A17Q8WUG5 538 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 TIFAQ96CG3 184 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 ZMYND15Q9H091 742 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 TKTL2Q9H0I9 626 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 ARHGEF38Q9NXL2 777 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 MARCH2Q9P0N8 246 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 RCOR3Q9P2K3 495 aaPredicted RBP19.46■□□□□ 0.71
VPS28-207ENST00000526977 ALOX15BO15296 676 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 HOXA9P31269 272 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 ZNF135P52742 658 aaPredicted RBP19.46■□□□□ 0.71
VPS28-207ENST00000526977 ZSCAN26Q16670 478 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 LONRF1Q17RB8 773 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 ANKRD22Q5VYY1 191 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 PYROXD2Q8N2H3 581 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 CSPG4P5Q96PW8 444 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 MAN1C1Q9NR34 630 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 CWC15Q9P013 229 aaKnown RBP19.46■□□□□ 0.71
VPS28-207ENST00000526977 SLC12A6Q9UHW9 1150 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 DNMT3LQ9UJW3 386 aa19.46■□□□□ 0.71
VPS28-207ENST00000526977 CHD9Q3L8U1 2897 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 EIF3HO15372 352 aaKnown RBP eCLIP19.45■□□□□ 0.7
VPS28-207ENST00000526977 TCEA3O75764 348 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 TBX18O95935 607 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 AGTP01019 485 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 F11P03951 625 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 SLC39A13Q96H72 371 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 SERPINB12Q96P63 405 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 HAPLN3Q96S86 360 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 CCSER2Q9H7U1 834 aa19.45■□□□□ 0.7
VPS28-207ENST00000526977 BCLAF3A2AJT9 711 aaKnown RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 GOLGA8MH3BSY2 632 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 MSI1O43347 362 aaKnown RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 HNRNPA1P09651 372 aaKnown RBP eCLIP19.44■□□□□ 0.7
VPS28-207ENST00000526977 ARL4AP40617 200 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 TBX4P57082 545 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 GAD2Q05329 585 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 SLC10A2Q12908 348 aaPredicted RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 MTA1Q13330 715 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 TRIP4Q15650 581 aaPredicted RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 TAB3Q8N5C8 712 aaPredicted RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 NACA2Q9H009 215 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 TLE6Q9H808 572 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 PRDM16Q9HAZ2 1276 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 CHD7Q9P2D1 2997 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 TCRBV7S3A2A0A539 114 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 PER2O15055 1255 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 MAP3K6O95382 1288 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 EPCAMP16422 314 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 ZFXP17010 805 aaPredicted RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 RBL1P28749 1068 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 HNRNPH2P55795 449 aaKnown RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 PPARDQ03181 441 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 RING1Q06587 406 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 FASTKD3Q14CZ7 662 aaKnown RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 HP1BP3Q5SSJ5 553 aaPredicted RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 CENPUQ71F23 418 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 GDPD5Q8WTR4 605 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 OSBPL2Q9H1P3 480 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 IL21Q9HBE4 155 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 ZNF334Q9HCZ1 680 aaPredicted RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 TMPRSS4Q9NRS4 437 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 HBS1LQ9Y450 684 aaKnown RBP19.44■□□□□ 0.7
VPS28-207ENST00000526977 HCFC2Q9Y5Z7 792 aa19.44■□□□□ 0.7
VPS28-207ENST00000526977 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.43■□□□□ 0.7
VPS28-207ENST00000526977 KCNU1A8MYU2 1149 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 GOT1P17174 413 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 AMPD1P23109 780 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms