RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 RABEPKQ7Z6M1 372 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 XYLT1Q86Y38 959 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 PHF13Q86YI8 300 aaPredicted RBP10.53□□□□□ -0.72
VPS28-204ENST00000526054 CNGA4Q8IV77 575 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 DEFB119Q8N690 84 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 CEP76Q8TAP6 659 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 PLD4Q96BZ4 506 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 ERLEC1Q96DZ1 483 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 SERPINB11Q96P15 392 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 PCDHB18PQ96TA0 734 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 ACOX2Q99424 681 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 GABRG3Q99928 467 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 C11orf70Q9BRQ4 267 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 GTPBP2Q9BX10 602 aaKnown RBP10.53□□□□□ -0.72
VPS28-204ENST00000526054 ADAM33Q9BZ11 813 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 DCLK3Q9C098 648 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 SLC32A1Q9H598 525 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 HCN2Q9UL51 889 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 CYP8B1Q9UNU6 501 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 HBS1LQ9Y450 684 aaKnown RBP10.53□□□□□ -0.72
VPS28-204ENST00000526054 ASPMQ8IZT6 3477 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 IGHV1OR15-9A0A0B4J2B8 117 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 FAM170AA1A519 330 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 PRRT4C9JH25 899 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 GOLGA8SH3BPF8 625 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 MFAP3LO75121 409 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 STC2O76061 302 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 HMBSP08397 361 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 SKILP12757 684 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 SPINK2P20155 84 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 GFPT1Q06210 699 aaPredicted RBP10.52□□□□□ -0.73
VPS28-204ENST00000526054 ZNF33AQ06730 810 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 C1QBPQ07021 282 aaKnown RBP10.52□□□□□ -0.73
VPS28-204ENST00000526054 DUOXA1Q1HG43 343 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 Q6ZNB5 142 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 ZNF571Q7Z3V5 609 aaPredicted RBP10.52□□□□□ -0.73
VPS28-204ENST00000526054 DRC7Q8IY82 874 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 DEFB106AQ8N104 65 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 HDDC3Q8N4P3 179 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 OR8K1Q8NGG5 319 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 SLC30A5Q8TAD4 765 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 DQX1Q8TE96 717 aaKnown RBP10.52□□□□□ -0.73
VPS28-204ENST00000526054 PIWIL1Q96J94 861 aaKnown RBP10.52□□□□□ -0.73
VPS28-204ENST00000526054 HSPA12BQ96MM6 686 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 SLC2A13Q96QE2 648 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 SYT11Q9BT88 431 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS28-204ENST00000526054 FAM204AQ9H8W3 233 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 CD248Q9HCU0 757 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 FSCN3Q9NQT6 498 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 CACNA2D2Q9NY47 1150 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 PLK2Q9NYY3 685 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 ADAM22Q9P0K1 906 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 SFMBT1Q9UHJ3 866 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 STAP1Q9ULZ2 295 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 SLC6A14Q9UN76 642 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 NAALADL1Q9UQQ1 740 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 ZNF510Q9Y2H8 683 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 RAD54BQ9Y620 910 aa10.52□□□□□ -0.73
VPS28-204ENST00000526054 ZZEF1O43149 2961 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 WDFY3Q8IZQ1 3526 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 AKR1B15C9JRZ8 316 aaPredicted RBP10.51□□□□□ -0.73
VPS28-204ENST00000526054 MSI1O43347 362 aaKnown RBP10.51□□□□□ -0.73
VPS28-204ENST00000526054 NDUFS2O75306 463 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 GRAP2O75791 330 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 FYNP06241 537 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 SERPINF2P08697 491 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 GZMAP12544 262 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 HNRNPH3P31942 346 aaKnown RBP10.51□□□□□ -0.73
VPS28-204ENST00000526054 HARS2P49590 506 aaKnown RBP10.51□□□□□ -0.73
VPS28-204ENST00000526054 GSCP56915 257 aaPredicted RBP10.51□□□□□ -0.73
VPS28-204ENST00000526054 TBX4P57082 545 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 CDK17Q00537 523 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 RING1Q06587 406 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 NNTQ13423 1086 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 STARD3Q14849 445 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 ARID5BQ14865 1188 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 TAF5Q15542 800 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 TRIP4Q15650 581 aaPredicted RBP10.51□□□□□ -0.73
VPS28-204ENST00000526054 C2CD6Q53TS8 623 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 DCAF6Q58WW2 860 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 NUGGCQ68CJ6 796 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 HGSNATQ68CP4 663 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 ACAD10Q6JQN1 1059 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 KIAA1324Q6UXG2 1013 aaKnown RBP10.51□□□□□ -0.73
VPS28-204ENST00000526054 MON1BQ7L1V2 547 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 TAC4Q86UU9 113 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 SLC41A1Q8IVJ1 513 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 TRIM11Q96F44 468 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 MRGPRX1Q96LB2 322 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 DNAJC7Q99615 494 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 SELENOOQ9BVL4 669 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 SCNM1Q9BWG6 230 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 SLC6A17Q9H1V8 727 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 CAPN10Q9HC96 672 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 CD93Q9NPY3 652 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 METTL5Q9NRN9 209 aaKnown RBP10.51□□□□□ -0.73
VPS28-204ENST00000526054 ABHD10Q9NUJ1 306 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 RRN3Q9NYV6 651 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms