RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SLU7O95391 586 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PGM3O95394 542 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNFRSF6BO95407 300 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LARGE1O95461 756 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 METTL18O95568 372 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NTSR2O95665 410 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NDST3O95803 873 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MLYCDO95822 493 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GUCA1CO95843 209 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 EFEMP2O95967 443 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PNPP00491 289 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 AFPP02771 609 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TFRCP02786 760 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 C4BPAP04003 597 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBB4AP04350 444 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CFIP05156 583 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLEC3BP05452 202 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP5BP06576 529 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PFKMP08237 780 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNRNP70P08621 437 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLTBP09497 229 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNRNPA1P09651 372 aaKnown RBP eCLIP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPSP0C0P6 89 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC175P0C221 793 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ELFN1P0C7U0 828 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMIGD3P0DMS9 266 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TXNP10599 105 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 EGR2P11161 476 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP2C9P11712 490 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT10P13645 584 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT13P13646 458 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD19P15391 556 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPR1P16066 1061 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF37AP17032 561 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GAP43P17677 238 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTPN2P17706 415 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 EGR1P18146 543 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT4P19013 534 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDH2P19022 906 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RXRAP19793 462 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 BTF3P20290 206 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MALP21145 153 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SAT1P21673 171 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL10P22301 178 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNA5P22460 613 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLRC1P26715 233 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAPK3P27361 379 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL1R2P27930 398 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABCD3P28288 659 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GABRB3P28472 473 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRDX5P30044 214 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TM4SF1P30408 202 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRKAR1BP31321 381 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 APOBEC3AP31941 199 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACSL1P33121 698 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSPA4P34932 840 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RFC1P35251 1148 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 BSGP35613 385 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PGM1P36871 562 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GP5P40197 560 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 THPOP40225 353 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HADHAP40939 763 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF2DP41214 584 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRPHP41219 470 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD86P42081 329 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPD2P43304 727 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMC4P43686 418 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNNT2P45379 298 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAPZA2P47755 286 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CARSP49589 748 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTCFP49711 727 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RGS3P49796 1198 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCT8P50990 548 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF41P51814 821 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RABGGTBP53611 331 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 BCAT1P54687 386 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAD23AP54725 363 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDE1AP54750 535 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALDH18A1P54886 795 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TPTEP56180 551 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RRP1P56182 461 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSD17B7P56937 341 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 UBASH3AP57075 661 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC26A5P58743 744 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NLRP5P59047 1200 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF4A1P60842 406 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS3AP61247 264 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS16P62249 146 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CXADRP78310 365 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPP30P78346 268 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRAMEP78395 509 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 POU6F2P78424 691 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARF5P84085 180 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HTD2P86397 168 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DGCR2P98153 550 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDK17Q00537 523 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSF1Q00613 529 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL1RL1Q01638 556 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MC1RQ01726 317 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 AKAP17AQ02040 695 aaKnown RBP0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms