RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CCDC33Q8N5R6 958 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 ARNTL2Q8WYA1 636 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 HDAC11Q96DB2 347 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 ANKRD27Q96NW4 1050 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 ACBD6Q9BR61 282 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 COLEC11Q9BWP8 271 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 TBC1D10AQ9BXI6 508 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 WWP1Q9H0M0 922 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 UPF3AQ9H1J1 476 aaKnown RBP15.25■□□□□ 0.03
NUP54-217ENST00000514987 EBF2Q9HAK2 575 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 UGT1A7Q9HAW7 530 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 UGT1A10Q9HAW8 530 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 UGT1A8Q9HAW9 530 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 ZFYVE28Q9HCC9 887 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 DDIT4Q9NX09 232 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 BFARQ9NZS9 450 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 MYBPHLA2RUH7 354 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 LMNAP02545 664 aaKnown RBP15.24■□□□□ 0.03
NUP54-217ENST00000514987 CYP11A1P05108 521 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 CALB2P22676 271 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 HTR7P34969 479 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 NPY2RP49146 381 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 ZNF157P51786 506 aaPredicted RBP15.24■□□□□ 0.03
NUP54-217ENST00000514987 CLCNKBP51801 687 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 NKX3-2P78367 333 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 OCRLQ01968 901 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 GALNT2Q10471 571 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 BST1Q10588 318 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 MAPRE1Q15691 268 aaKnown RBP15.24■□□□□ 0.03
NUP54-217ENST00000514987 CHI3L2Q15782 390 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 TBCCQ15814 346 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 PM20D1Q6GTS8 502 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 DCLRE1AQ6PJP8 1040 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 LONP2Q86WA8 852 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.24■□□□□ 0.03
NUP54-217ENST00000514987 SMC1BQ8NDV3 1235 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 ZMIZ2Q8NF64 920 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 AGAP11Q8TF27 550 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 UROC1Q96N76 676 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 CPNE1Q99829 537 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 FAM96AQ9H5X1 160 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 WDCPQ9H6R7 721 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 XPNPEP3Q9NQH7 507 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 TRPM7Q96QT4 1865 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 HHLA1C9JL84 531 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 SNNO75324 88 aaPredicted RBP15.24■□□□□ 0.03
NUP54-217ENST00000514987 USP17L7P0C7H9 530 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 MYL2P10916 166 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 SKIP12755 728 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 PTPN3P26045 913 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 GP5P40197 560 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 STX3Q13277 289 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 PRPSAP1Q14558 356 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 UPP1Q16831 310 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 MFSD14CQ5VZR4 134 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 CST9Q5W186 159 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 RASSF3Q86WH2 238 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 UTP4Q969X6 686 aaKnown RBP15.24■□□□□ 0.03
NUP54-217ENST00000514987 TBC1D31Q96DN5 1066 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 PTCD3Q96EY7 689 aaKnown RBP15.24■□□□□ 0.03
NUP54-217ENST00000514987 PPP1R2P1Q96PQ5 205 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 STN1Q9H668 368 aaKnown RBP15.24■□□□□ 0.03
NUP54-217ENST00000514987 THAP1Q9NVV9 213 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 ZFATQ9P243 1243 aa15.24■□□□□ 0.03
NUP54-217ENST00000514987 SCN10AQ9Y5Y9 1956 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 CBX6O95503 412 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 GRK2P25098 689 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 SERPINB3P29508 390 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 PDE1BQ01064 536 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 MGAT3Q09327 533 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 E2F5Q15329 346 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 TEX44Q53QW1 395 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 GDF6Q6KF10 455 aaPredicted RBP15.23■□□□□ 0.03
NUP54-217ENST00000514987 FAM171BQ6P995 826 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 AGMOQ6ZNB7 445 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 IFNL1Q8IU54 200 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 ARHGAP24Q8N264 748 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 PPP1R14CQ8TAE6 165 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 CERS2Q96G23 380 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 BTBD10Q9BSF8 475 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 OSBPL2Q9H1P3 480 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 GBA3Q9H227 469 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 DMAP1Q9NPF5 467 aaPredicted RBP15.23■□□□□ 0.03
NUP54-217ENST00000514987 CASS4Q9NQ75 786 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 TMPRSS4Q9NRS4 437 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 SYBUQ9NX95 663 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 SORCS3Q9UPU3 1222 aa15.23■□□□□ 0.03
NUP54-217ENST00000514987 COL4A4P53420 1690 aaPredicted RBP15.22■□□□□ 0.03
NUP54-217ENST00000514987 USP1O94782 785 aa15.22■□□□□ 0.03
NUP54-217ENST00000514987 CHRNA1P02708 482 aa15.22■□□□□ 0.03
NUP54-217ENST00000514987 ITGA2BP08514 1039 aa15.22■□□□□ 0.03
NUP54-217ENST00000514987 SPRP35270 261 aaPredicted RBP15.22■□□□□ 0.03
NUP54-217ENST00000514987 TIGD5Q53EQ6 642 aa15.22■□□□□ 0.03
NUP54-217ENST00000514987 THEM5Q8N1Q8 247 aa15.22■□□□□ 0.03
NUP54-217ENST00000514987 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.22■□□□□ 0.03
NUP54-217ENST00000514987 RNF169Q8NCN4 708 aa15.22■□□□□ 0.03
NUP54-217ENST00000514987 KCNK16Q96T55 309 aa15.22■□□□□ 0.03
NUP54-217ENST00000514987 TRIM56Q9BRZ2 755 aaKnown RBP15.22■□□□□ 0.03
NUP54-217ENST00000514987 MMADHCQ9H3L0 296 aaPredicted RBP15.22■□□□□ 0.03
NUP54-217ENST00000514987 MIOSQ9NXC5 875 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms