RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 COG4Q9H9E3 785 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 TXNRD2Q9NNW7 524 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 ATP9BO43861 1147 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 LMO2P25791 158 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 NIPAL4Q0D2K0 466 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 MSLNQ13421 630 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 SLC9B1Q4ZJI4 515 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 PDSS2Q86YH6 399 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 SULF1Q8IWU6 871 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 LENG8Q96PV6 779 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 SNTG2Q9NY99 539 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 TUBGCP4Q9UGJ1 667 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 SORCS3Q9UPU3 1222 aa9.5□□□□□ -0.89
LIMCH1-215ENST00000512632 CAPN8A6NHC0 703 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 CFLARO15519 480 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ZFXP17010 805 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 CNTFP26441 200 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 PKDCCQ504Y2 493 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 PGM2L1Q6PCE3 622 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 DNAAF3Q8N9W5 541 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 CMTM5Q96DZ9 223 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 FCRL3Q96P31 734 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 OR52B2Q96RD2 323 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 KLHL4Q9C0H6 718 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 SNX15Q9NRS6 342 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ITGA11Q9UKX5 1188 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 RGPD3A6NKT7 1758 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 RGPD4Q7Z3J3 1758 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 CCNT2O60583 730 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 USP2O75604 605 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 PGM3O95394 542 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 CCR10P46092 362 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 DCAF6Q58WW2 860 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 AAGABQ6PD74 315 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 C4orf22Q6V702 233 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 NAPRTQ6XQN6 538 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 STRA8Q7Z7C7 330 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 DEFB106AQ8N104 65 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ACMSDQ8TDX5 336 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 OTUD5Q96G74 571 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ERAP1Q9NZ08 941 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 RLFQ13129 1914 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 PHIPQ8WWQ0 1821 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ZNF195O14628 629 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ALDH1A2O94788 518 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 OR6B1O95007 311 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ZBTB7AO95365 584 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ZNF286BP0CG31 522 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 COX4I1P13073 169 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 GRK2P25098 689 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 NR2C2P49116 596 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 IRF9Q00978 393 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 KLF10Q13118 480 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 NME3Q13232 169 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 EML3Q32P44 896 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 HSP90AA5PQ58FG0 334 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ST13P4Q8IZP2 240 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 ACVR1CQ8NER5 493 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 CERS2Q96G23 380 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 DNAJB4Q9UDY4 337 aa9.49□□□□□ -0.89
LIMCH1-215ENST00000512632 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 IRF6O14896 467 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 TPH1P17752 444 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 MX2P20592 715 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 GP5P40197 560 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 CDK7P50613 346 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 CDK18Q07002 472 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 KCTD2Q14681 263 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 ZNF618Q5T7W0 954 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 LRRC8BQ6P9F7 803 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 ZNF567Q8N184 647 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 SPATA16Q9BXB7 569 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 KLHL8Q9P2G9 620 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 SSX2IPQ9Y2D8 614 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 LTFP02788 710 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 AMHP03971 560 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 POLBP06746 335 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 UQCRBP14927 111 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 PGAM1P18669 254 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 GRIA2P42262 883 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 RABGGTBP53611 331 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 IFRD2Q12894 506 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 KIZQ2M2Z5 673 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 PPM1LQ5SGD2 360 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 STEAP4Q687X5 459 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 MTHFD1LQ6UB35 978 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 DEFB132Q7Z7B7 95 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 SDCCAG8Q86SQ7 713 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 APOBEC3FQ8IUX4 373 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 ACTRT2Q8TDY3 377 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 MFSD3Q96ES6 412 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 A0A096LPK6 155 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 CHRNGP07510 517 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 FDFT1P37268 417 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 NUDT2P50583 147 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 SLC2A14Q8TDB8 520 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 CAMKK2Q96RR4 588 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 UNKQ9C0B0 810 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 FAM192AQ9GZU8 254 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms