RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PAX3P23760 479 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ALDH1A3P47895 512 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 CSHL1Q14406 222 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 PREPLQ4J6C6 727 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 MIB1Q86YT6 1006 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 C1orf127Q8N9H9 656 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF516Q92618 1163 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 CERS2Q96G23 380 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 DCUN1D1Q96GG9 259 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ASPSCR1Q9BZE9 553 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 STN1Q9H668 368 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 NMRAL1Q9HBL8 299 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ENTPD7Q9NQZ7 604 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 AFF4Q9UHB7 1163 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 C10orf71Q711Q0 1435 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 SOWAHBA6NEL2 793 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 SYCE1LA8MT33 242 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ZBTB24O43167 697 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 HIST1H2AGP0C0S8 130 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 HIST1H2ADP20671 130 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 EEF1DP29692 281 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 TUBP50607 506 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 CYTH1Q15438 398 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 STRADAQ7RTN6 431 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 KYQ8NBH2 561 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 CPT1BQ92523 772 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 HIST1H2AHQ96KK5 128 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 UROC1Q96N76 676 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 HIST1H2AJQ99878 128 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 H2AFJQ9BTM1 129 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 GPR63Q9BZJ6 419 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 MRPL46Q9H2W6 279 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 SYTL2Q9HCH5 934 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ARMCX1Q9P291 453 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 RCOR3Q9P2K3 495 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF212Q9UDV6 495 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 FARP1Q9Y4F1 1045 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 MYH15Q9Y2K3 1946 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 STX7O15400 261 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ERVK-10P10266 1014 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 GOT1P17174 413 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 TPSB2P20231 275 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 CHRM3P20309 590 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ASPAP45381 313 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 CRYBB1P53674 252 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 OXCT1P55809 520 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 TBX4P57082 545 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 KCNJ2P63252 427 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 IRX1P78414 480 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 MRPS5P82675 430 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 LBRQ14739 615 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 TPSAB1Q15661 275 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 CES3Q6UWW8 571 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ZCCHC23Q6ZST2 131 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 DEFB107AQ8IZN7 70 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC44A1Q8WWI5 657 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ZBED2Q9BTP6 218 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 DUSP16Q9BY84 665 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 RNPEPL1Q9HAU8 725 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 SCUBE2Q9NQ36 999 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 HES2Q9Y543 173 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 PCDHB5Q9Y5E4 795 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 SMIM35A0A1B0GVV1 85 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 BCLAF3A2AJT9 711 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 PRRG1O14668 218 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 CLASP2O75122 1294 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 VPS26AO75436 327 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ATXN3P54252 364 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ANGPTL8Q6UXH0 198 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 TNIP2Q8NFZ5 429 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 PIWIL2Q8TC59 973 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF333Q96JL9 665 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 TSPYL2Q9H2G4 693 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 PKD2L2Q9NZM6 624 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 OR12D3Q9UGF7 316 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 NCALDP61601 193 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 POU5F1Q01860 360 aaKnown RBP11□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC30A9Q6PML9 568 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 ADGRD1Q6QNK2 874 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 OTOAQ7RTW8 1153 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 GALNT4Q8N4A0 578 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 CEP70Q8NHQ1 597 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 ADGRA2Q96PE1 1338 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 IRS2Q9Y4H2 1338 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 TOGARAM1Q9Y4F4 1720 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 FAM237BA0A1B0GVD1 139 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC12A8A0AV02 714 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 TCEA3O75764 348 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 WFS1O76024 890 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 MMP3P08254 477 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 PTPN7P35236 360 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 MLH1P40692 756 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 MRPS6P82932 125 aaKnown RBP11□□□□□ -0.65
LIMCH1-205ENST00000503057 POU4F1Q01851 419 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC25A52Q3SY17 297 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 PCID2Q5JVF3 399 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 FNBP1LQ5T0N5 605 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 IZUMO2Q6UXV1 221 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 NUP93Q8N1F7 819 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 OR52K1Q8NGK4 314 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms