RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ZNF366Q8N895 744 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 KDM1BQ8NB78 822 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 MYEOVQ96EZ4 313 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 PRICKLE1Q96MT3 831 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-214ENST00000496043 SLC2A13Q96QE2 648 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 PCED1AQ9H1Q7 454 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 SYNCQ9H7C4 482 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 FAM204AQ9H8W3 233 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 FSCN3Q9NQT6 498 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 SAMSN1Q9NSI8 373 aaKnown RBP13.19□□□□□ -0.3
PTPRF-214ENST00000496043 LMBRD1Q9NUN5 540 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 DDIT4Q9NX09 232 aa13.19□□□□□ -0.3
PTPRF-214ENST00000496043 XPO7Q9UIA9 1087 aaKnown RBP13.19□□□□□ -0.3
PTPRF-214ENST00000496043 AJAP1Q9UKB5 411 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-214ENST00000496043 INTS6Q9UL03 887 aaKnown RBP13.19□□□□□ -0.3
PTPRF-214ENST00000496043 CNOT1A5YKK6 2376 aaKnown RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 PLXND1Q9Y4D7 1925 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 SYNJ2BP-COX16A0A087WUM0 186 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 A0A1B0GTW7 788 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 UPK3BL1B0FP48 263 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 UPK3BL2E5RIL1 263 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 F5H5T6 163 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 RNASEH1O60930 286 aaKnown RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 GRAP2O75791 330 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 LUC7L3O95232 432 aaKnown RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 SRPRAP08240 638 aaKnown RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 EEF1GP26641 437 aaKnown RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 NOS2P35228 1153 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 CSKP41240 450 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 RPS14P62263 151 aaKnown RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 PITX1P78337 314 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 SLC6A3Q01959 620 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 SFSWAPQ12872 951 aaKnown RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 SEMA3BQ13214 749 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 SLC12A1Q13621 1099 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 RAPGEF1Q13905 1077 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 TCP11X2Q5H9J9 407 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 FSCBQ5H9T9 825 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 DPY19L2P1Q6NXN4 242 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 FAM183BPQ6ZVS7 135 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 ZDHHC17Q8IUH5 632 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 MINDY1Q8N5J2 469 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 TMEM35BQ8NCS4 154 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 C1orf131Q8NDD1 294 aaKnown RBP13.18□□□□□ -0.3
PTPRF-214ENST00000496043 DEFB124Q8NES8 71 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 ZDHHC5Q9C0B5 715 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 MIR1-1HGQ9H1L0 117 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 COX16Q9P0S2 106 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 ERVW-1Q9UQF0 538 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 NCKAP1Q9Y2A7 1128 aa13.18□□□□□ -0.3
PTPRF-214ENST00000496043 TARSL2A2RTX5 802 aaKnown RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 ERBB2P04626 1255 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 NNMTP40261 264 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 OXCT1P55809 520 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 SHC2P98077 582 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 ECT2LQ008S8 904 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 SLC14A1Q13336 389 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 HNRNPA1L2Q32P51 320 aaKnown RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 PITRM1Q5JRX3 1037 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 RABGAP1LQ5R372 815 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 RNF219Q5W0B1 726 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 ZNF776Q68DI1 518 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 OLFML1Q6UWY5 402 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 MMS22LQ6ZRQ5 1243 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 CACUL1Q86Y37 369 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 ZNF397Q8NF99 534 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 ENOX1Q8TC92 643 aaKnown RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 PPP1R9BQ96SB3 815 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 PRMT1Q99873 361 aaKnown RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 STK33Q9BYT3 514 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 BTBD1Q9H0C5 482 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 DNAAF2Q9NVR5 837 aaKnown RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 TMEM51Q9NW97 253 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 RRN3Q9NYV6 651 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 EIF2B4Q9UI10 523 aaKnown RBP13.17□□□□□ -0.3
PTPRF-214ENST00000496043 SCML1Q9UN30 329 aa13.17□□□□□ -0.3
PTPRF-214ENST00000496043 BCAT2O15382 392 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 TPM2P07951 284 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 PNMA6AP0CW24 399 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 CYP11B1P15538 503 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 ACSL1P33121 698 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 RNASE9P60153 205 aaKnown RBP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 SULT2A1Q06520 285 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 ZNF252P-AS1Q0IIN9 211 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 NME3Q13232 169 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 HNRNPDQ14103 355 aaKnown RBP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 ARID5BQ14865 1188 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 TTC31Q49AM3 519 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 PTPN20Q4JDL3 420 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 TTC39BQ5VTQ0 682 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 SLC26A9Q7LBE3 791 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 PIP4P1Q86T03 277 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 ERICH1Q86X53 443 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 APCDD1Q8J025 514 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 CCAR2Q8N163 923 aaKnown RBP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 GANCQ8TET4 914 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 C18orf8Q96DM3 657 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 MYO19Q96H55 970 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 MRGPRX3Q96LB0 322 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 NAA15Q9BXJ9 866 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms