RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 KLHL14Q9P2G3 628 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 WDR91A4D1P6 747 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 TNFRSF10BO14763 440 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 DNAJC8O75937 253 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 ALDH1A2O94788 518 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 UBOX5O94941 541 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 MGAT1P26572 445 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 EPHB2P29323 1055 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 SESN2P58004 480 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 GALNTL6Q49A17 601 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 FAM133BQ5BKY9 247 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 ARNTL2Q8WYA1 636 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 HDAC11Q96DB2 347 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 BRD8Q9H0E9 1235 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 HAUS2Q9NVX0 235 aa21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 PIH1D1Q9NWS0 290 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-208ENST00000492980 OR4Q2P0C623 313 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 MX2P20592 715 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 HOXD10P28358 340 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 FAM189BP81408 668 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 BMPR2Q13873 1038 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 NOMO2Q5JPE7 1267 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 CASC4Q6P4E1 433 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 DEPDC1BQ8WUY9 529 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 APBB2Q92870 758 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 RNF34Q969K3 372 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 OSBPL2Q9H1P3 480 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 ARHGEF38Q9NXL2 777 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 IRAK2O43187 625 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 RFPL1O75677 317 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 SERPINB6P35237 376 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 GRIK1P39086 918 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 CCNFP41002 786 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 COLGALT2Q8IYK4 626 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 MTBPQ96DY7 904 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 FAM111AQ96PZ2 611 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 RXFP1Q9HBX9 757 aa21.67■■□□□ 1.06
CCDC88B-208ENST00000492980 MYO16Q9Y6X6 1858 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 A0A1W2PQ45 241 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 A0A1W2PQY0 241 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 TMEM189-UBE2V1I3L0A0 370 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 KRT38O76015 456 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 PGAM1P18669 254 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 GARSP41250 739 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 OTOAQ7RTW8 1153 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 CHSY1Q86X52 802 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 CCNJLQ8IV13 435 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 UNC5BQ8IZJ1 945 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 FITM2Q8N6M3 262 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 SLC43A3Q8NBI5 491 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 URGCPQ8TCY9 931 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 RAET1EQ8TD07 263 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 TSEN34Q9BSV6 310 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 ABCC13Q9NSE7 274 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 SYBUQ9NX95 663 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 NEU3Q9UQ49 428 aa21.66■■□□□ 1.06
CCDC88B-208ENST00000492980 HMX2A2RU54 273 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 COPEO14579 308 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 CYP2C18P33260 490 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 PGFP49763 221 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 SLC39A12Q504Y0 691 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 CDHR3Q6ZTQ4 885 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 GBP7Q8N8V2 638 aaPredicted RBP21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 TTC17Q96AE7 1141 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 THOC1Q96FV9 657 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 CAPNS2Q96L46 248 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 SRPK1Q96SB4 655 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 ZCWPW1Q9H0M4 648 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 TBC1D13Q9NVG8 400 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 SHROOM3Q8TF72 1996 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 KIF3CO14782 793 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 ZBTB24O43167 697 aaPredicted RBP21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 MTSS1O43312 755 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 SERPINB9P50453 376 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 NIPAL4Q0D2K0 466 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 ZBTB17Q13105 803 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 BTBD8Q5XKL5 378 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 LHX8Q68G74 356 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 MARK2Q7KZI7 788 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 SCD5Q86SK9 330 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 SMOC2Q9H3U7 446 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 MANSC1Q9H8J5 431 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 SLC40A1Q9NP59 571 aa21.65■■□□□ 1.06
CCDC88B-208ENST00000492980 OAZ2O95190 189 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 AP2A1O95782 977 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 CD68P34810 354 aaPredicted RBP21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 OR1G1P47890 313 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 OLIG2Q13516 323 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 CRYMQ14894 314 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 ANKLE1Q8NAG6 615 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 PXYLP1Q8TE99 480 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 PTPRN2Q92932 1015 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 NAT9Q9BTE0 207 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 GBA3Q9H227 469 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 ALG13Q9NP73 1137 aaKnown RBP21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 MKS1Q9NXB0 559 aa21.64■■□□□ 1.06
CCDC88B-208ENST00000492980 CEP350Q5VT06 3117 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 BRMS1LQ5PSV4 323 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 DPF3Q92784 378 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 CASP10Q92851 521 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms