RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 ST8SIA6P61647 398 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 PITX1P78337 314 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-211ENST00000491233 BNC1Q01954 994 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 APBA1Q02410 837 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 ZBTB16Q05516 673 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 HNRNPDQ14103 355 aaKnown RBP14.13□□□□□ -0.15
COL6A3-211ENST00000491233 CAMK4Q16566 473 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 ARHGAP44Q17R89 818 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 ZC3H12AQ5D1E8 599 aaKnown RBP14.13□□□□□ -0.15
COL6A3-211ENST00000491233 FSCBQ5H9T9 825 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 PITRM1Q5JRX3 1037 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 RAP1GAP2Q684P5 730 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 MMS22LQ6ZRQ5 1243 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 LGI2Q8N0V4 545 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 C1orf216Q8TAB5 229 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 TTC17Q96AE7 1141 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 MRGPRX3Q96LB0 322 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 BTBD1Q9H0C5 482 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 POPDC2Q9HBU9 364 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 KIAA1468Q9P260 1216 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 APEX2Q9UBZ4 518 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 SUN2Q9UH99 717 aa14.13□□□□□ -0.15
COL6A3-211ENST00000491233 FNDC3AQ9Y2H6 1198 aaKnown RBP14.13□□□□□ -0.15
COL6A3-211ENST00000491233 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-211ENST00000491233 A0A1B0GVT2 93 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 SIN3BO75182 1162 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 IGLV3-25P01717 112 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 TACR2P21452 398 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 UBE2HP62256 183 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 YWHAZP63104 245 aaKnown RBP14.12□□□□□ -0.15
COL6A3-211ENST00000491233 TRIP6Q15654 476 aaKnown RBP14.12□□□□□ -0.15
COL6A3-211ENST00000491233 ZNF423Q2M1K9 1284 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 HNRNPA1L2Q32P51 320 aaKnown RBP14.12□□□□□ -0.15
COL6A3-211ENST00000491233 GBP6Q6ZN66 633 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 TMEM110Q86TL2 294 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 PASD1Q8IV76 773 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 DHX40Q8IX18 779 aaKnown RBP14.12□□□□□ -0.15
COL6A3-211ENST00000491233 FAM81BQ96LP2 452 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 MED15Q96RN5 788 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 RSPH9Q9H1X1 276 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-211ENST00000491233 PABPC3Q9H361 631 aaKnown RBP14.12□□□□□ -0.15
COL6A3-211ENST00000491233 THAP9Q9H5L6 903 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 GAREM1Q9H706 876 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 FAM204AQ9H8W3 233 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 AJAP1Q9UKB5 411 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-211ENST00000491233 ZMIZ1Q9ULJ6 1067 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 PCDHB9Q9Y5E1 797 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 CEP295Q9C0D2 2601 aa14.12□□□□□ -0.15
COL6A3-211ENST00000491233 FRYQ5TBA9 3013 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 TMEM8BA6NDV4 472 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 F5H5T6 163 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 H0Y626 953 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 FSBPO95073 299 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 TRIM16O95361 564 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 MOCS3O95396 460 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 ZNF883P0CG24 379 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 RDXP35241 583 aaKnown RBP14.11□□□□□ -0.15
COL6A3-211ENST00000491233 CTSOP43234 321 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-211ENST00000491233 CSNK1EP49674 416 aaKnown RBP14.11□□□□□ -0.15
COL6A3-211ENST00000491233 AFF3P51826 1226 aaKnown RBP14.11□□□□□ -0.15
COL6A3-211ENST00000491233 TAF5Q15542 800 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 HLA-BQ31612 363 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 IL27RAQ6UWB1 636 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 LAYNQ6UX15 382 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 CHCHD4Q8N4Q1 142 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 ATP6V0D2Q8N8Y2 350 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 KDF1Q8NAX2 398 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-211ENST00000491233 GANCQ8TET4 914 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 SHC3Q92529 594 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 BIRC7Q96CA5 298 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 BTN2A3PQ96KV6 586 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 CPXM1Q96SM3 734 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 SGK2Q9HBY8 427 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 TM9SF3Q9HD45 589 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 TM7SF3Q9NS93 570 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 KIAA1522Q9P206 1035 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-211ENST00000491233 ERVW-1Q9UQF0 538 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 MSRB2Q9Y3D2 182 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 CEP83Q9Y592 693 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 ITIH6Q6UXX5 1313 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 PTPRBP23467 1997 aa14.11□□□□□ -0.15
COL6A3-211ENST00000491233 SYNJ2BP-COX16A0A087WUM0 186 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 GTPBP10A4D1E9 387 aaKnown RBP14.1□□□□□ -0.15
COL6A3-211ENST00000491233 TTC34A8MYJ7 566 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 SRPRAP08240 638 aaKnown RBP14.1□□□□□ -0.15
COL6A3-211ENST00000491233 FTH1P19P0C7X4 201 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 MTIF2P46199 727 aaKnown RBP14.1□□□□□ -0.15
COL6A3-211ENST00000491233 NUMBP49757 651 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 TEAD4Q15561 434 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 CST6Q15828 149 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 EXOC3L4Q17RC7 722 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 KIF19Q2TAC6 998 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 RNF219Q5W0B1 726 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-211ENST00000491233 USP30Q70CQ3 517 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 RAB44Q7Z6P3 723 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-211ENST00000491233 CIR1Q86X95 450 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-211ENST00000491233 IRF2BP1Q8IU81 584 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 APCDD1Q8J025 514 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 DEFB106AQ8N104 65 aa14.1□□□□□ -0.15
COL6A3-211ENST00000491233 KDM1BQ8NB78 822 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms