RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 KPNA1P52294 538 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 SAMD4BQ5PRF9 694 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 FOXR2Q6PJQ5 311 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 ZNF398Q8TD17 642 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 HASPINQ8TF76 798 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 SLC25A23Q9BV35 468 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 ACP6Q9NPH0 428 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 COPG2Q9UBF2 871 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 PRR23AA6NEV1 266 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 CNOT3O75175 753 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 VPS4BO75351 444 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 NPM3O75607 178 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 BCL10O95999 233 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 SERPINF2P08697 491 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 RPL14P50914 215 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 PDK4Q16654 411 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 PARP6Q2NL67 630 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 KHDRBS2Q5VWX1 349 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 C10orf53Q8N6V4 93 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 DLG3Q92796 817 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 VPS28Q9UK41 221 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 LRG1P02750 347 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 ACAT1P24752 427 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 CHKAP35790 457 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 ALDH6A1Q02252 535 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 SPATA20Q8TB22 786 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 KLHL25Q9H0H3 589 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 DMAP1Q9NPF5 467 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 SAE1Q9UBE0 346 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 RIC1Q4ADV7 1423 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 A0A087X1B8 175 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 NKRFO15226 690 aaKnown RBP eCLIP16.77■□□□□ 0.28
COL7A1-210ENST00000487017 MARCKSL1P49006 195 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 SCNN1BP51168 640 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 SLC15A2Q16348 729 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 C16orf46Q6P387 395 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 RNF180Q86T96 592 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 SLC9A9Q8IVB4 645 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 PYDC1Q8WXC3 89 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 EMILIN2Q9BXX0 1053 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 TMEM134Q9H6X4 195 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 ACTR8Q9H981 624 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 ASTN2O75129 1339 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-210ENST00000487017 A0A0B4J269 797 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 FAM237BA0A1B0GVD1 139 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 CASTOR2A6NHX0 329 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 CCDC154A6NI56 674 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 NBNO60934 754 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 FMO1Q01740 532 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 TMEM26Q6ZUK4 368 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 CYP4Z1Q86W10 505 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 SLC2A14Q8TDB8 520 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 MKL1Q969V6 931 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 MAGED4Q96JG8 741 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 INPP4AQ96PE3 977 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-210ENST00000487017 COPS7BQ9H9Q2 264 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-210ENST00000487017 SETD4Q9NVD3 440 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 PCDHA11Q9Y5I1 949 aa16.77■□□□□ 0.28
COL7A1-210ENST00000487017 ARHGAP15Q53QZ3 475 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 CYP2R1Q6VVX0 501 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 PIWIL2Q8TC59 973 aaKnown RBP16.77■□□□□ 0.27
COL7A1-210ENST00000487017 RSPH1Q8WYR4 309 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 SMARCD1Q96GM5 515 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 GLT1D1Q96MS3 346 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 PORCNQ9H237 461 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 CCDC167Q9P0B6 97 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 TMEM114B3SHH9 223 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 KRT20P35900 424 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 KCNJ2P63252 427 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 OTUD3Q5T2D3 398 aaPredicted RBP16.77■□□□□ 0.27
COL7A1-210ENST00000487017 FNDC5Q8NAU1 212 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 C9orf16Q9BUW7 83 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 PARVBQ9HBI1 364 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 PPP2R3BQ9Y5P8 575 aa16.77■□□□□ 0.27
COL7A1-210ENST00000487017 LINC00854A0A1B0GVQ3 168 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 CBX4O00257 560 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ENDOD1O94919 500 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 KRT6AP02538 564 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 KRT6BP04259 564 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ITGAVP06756 1048 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 HALP42357 657 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 KRT6CP48668 564 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 MSLNQ13421 630 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 NFE2Q16621 373 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ARMC6Q6NXE6 501 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 SLC44A2Q8IWA5 706 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 EID3Q8N140 333 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 LPCAT1Q8NF37 534 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 MTERF3Q96E29 417 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ASB2Q96Q27 587 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 CDHR5Q9HBB8 845 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 KRT84Q9NSB2 600 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 TRPM5Q9NZQ8 1165 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 CCNT2O60583 730 aaKnown RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 PIGNO95427 931 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 CALCAP01258 141 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 RPLP2P05387 115 aaKnown RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 YBX3P16989 372 aaKnown RBP eCLIP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 AKAP5P24588 427 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 POU1F1P28069 291 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms