RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 MCF2P10911 925 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 CCDC130P13994 396 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 GP5P40197 560 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 GARSP41250 739 aaKnown RBP12.52□□□□□ -0.41
COL3A1-206ENST00000487010 PTPN9P43378 593 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 CLCN3P51790 818 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 ATXN1P54253 815 aaKnown RBP12.52□□□□□ -0.41
COL3A1-206ENST00000487010 TMEM132DQ14C87 1099 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 SLC9B1Q4ZJI4 515 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 LRRC23Q53EV4 343 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-206ENST00000487010 METTL21CQ5VZV1 264 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 EFCAB12Q6NXP0 572 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 SPATA31D4Q6ZUB0 917 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 EEPD1Q7L9B9 569 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 PLPPR4Q7Z2D5 763 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 HACE1Q8IYU2 909 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 ZNF781Q8N8C0 355 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 SLC35F5Q8WV83 523 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 DGCR14Q96DF8 476 aaKnown RBP12.52□□□□□ -0.41
COL3A1-206ENST00000487010 DCUN1D1Q96GG9 259 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 NAT9Q9BTE0 207 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 C11orf84Q9BUA3 381 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-206ENST00000487010 OXCT2Q9BYC2 517 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-206ENST00000487010 B3GNT5Q9BYG0 378 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 OCEL1Q9H607 264 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 MAN1C1Q9NR34 630 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 TXNDC16Q9P2K2 825 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 MFHAS1Q9Y4C4 1052 aa12.52□□□□□ -0.41
COL3A1-206ENST00000487010 E9PBE3 544 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 KLHL41O60662 606 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 PEX10O60683 326 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 STK10O94804 968 aaKnown RBP12.51□□□□□ -0.41
COL3A1-206ENST00000487010 FBXO21O94952 628 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 HSPA4LO95757 839 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 STAU1O95793 577 aaKnown RBP12.51□□□□□ -0.41
COL3A1-206ENST00000487010 SETSIPP0DME0 302 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 ERVK-10P10266 1014 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 YY1P25490 414 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 MAGEA12P43365 314 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 NUMBP49757 651 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 RBP5P82980 135 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 R3HDM1Q15032 1099 aaKnown RBP12.51□□□□□ -0.41
COL3A1-206ENST00000487010 HSDL1Q3SXM5 330 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 PABPC1LQ4VXU2 614 aaKnown RBP12.51□□□□□ -0.41
COL3A1-206ENST00000487010 GRTP1Q5TC63 336 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 ARMC3Q5W041 872 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 CENPIQ92674 756 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-206ENST00000487010 PRICKLE1Q96MT3 831 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-206ENST00000487010 CPNE1Q99829 537 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 SNX15Q9NRS6 342 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 PRMT7Q9NVM4 692 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-206ENST00000487010 SYBUQ9NX95 663 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 DPP3Q9NY33 737 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 CLIC5Q9NZA1 410 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 ATXN10Q9UBB4 475 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 STK39Q9UEW8 545 aa12.51□□□□□ -0.41
COL3A1-206ENST00000487010 MYO18AQ92614 2054 aaKnown RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 E2F8A0AVK6 867 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 TMEM114B3SHH9 223 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 CREB3O43889 395 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 DNAJA2O60884 412 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 ARIH2O95376 493 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 PGM3O95394 542 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 GLDCP23378 1020 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 RGS2P41220 211 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 MAP7Q14244 749 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 SMAD1Q15797 465 aaKnown RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 PRAMEF18Q5VWM3 479 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 BSPRYQ5W0U4 402 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 NAPRTQ6XQN6 538 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 CMC1Q7Z7K0 106 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 ACOT1Q86TX2 421 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 ZDHHC17Q8IUH5 632 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 TNS4Q8IZW8 715 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 PLD6Q8N2A8 252 aaKnown RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 FAM81AQ8TBF8 368 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 MAPK15Q8TD08 544 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 JDP2Q8WYK2 163 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 ISL2Q96A47 359 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 NMD3Q96D46 503 aaKnown RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 LENG8Q96PV6 779 aaPredicted RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 LGMNQ99538 433 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 NFKBIZQ9BYH8 718 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 Q9H521 79 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 GGA3Q9NZ52 723 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 ADAM28Q9UKQ2 775 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 PRPF19Q9UMS4 504 aaKnown RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 USP3Q9Y6I4 520 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 EVPLQ92817 2033 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 G3V2L1 256 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 NOP56O00567 594 aaKnown RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 VILLO15195 856 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 PENKP01210 267 aaPredicted RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 POLBP06746 335 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 THRAP10827 490 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 PMLP29590 882 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 MLH1P40692 756 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 RPL5P46777 297 aaKnown RBP12.5□□□□□ -0.41
COL3A1-206ENST00000487010 SNX16P57768 344 aa12.5□□□□□ -0.41
COL3A1-206ENST00000487010 FAM187BQ17R55 369 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms