RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TGM2P21980 687 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 CHKAP35790 457 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 CPA2P48052 419 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 PXDC1Q5TGL8 231 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 EXD3Q8N9H8 876 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 FAM47BQ8NA70 645 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 OR52N4Q8NGI2 321 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 CPT1BQ92523 772 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 NPAS1Q99742 590 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 HTATIP2Q9BUP3 242 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 BRD8Q9H0E9 1235 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 ELAC1Q9H777 363 aaKnown RBP6.68□□□□□ -1.34
USP40-213ENST00000483216 TRNAU1APQ9NX07 287 aaKnown RBP6.68□□□□□ -1.34
USP40-213ENST00000483216 MTMR4Q9NYA4 1195 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 ZMYM2Q9UBW7 1377 aa6.68□□□□□ -1.34
USP40-213ENST00000483216 PPEF2O14830 753 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 PEPDP12955 493 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 VEGFAP15692 232 aaPredicted RBP6.67□□□□□ -1.34
USP40-213ENST00000483216 TRAPPC10P48553 1259 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 SHC2P98077 582 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 ARL14EPQ8N8R7 260 aaPredicted RBP6.67□□□□□ -1.34
USP40-213ENST00000483216 ZNF347Q96SE7 839 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 TMEM120AQ9BXJ8 343 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 MOV10Q9HCE1 1003 aaKnown RBP6.67□□□□□ -1.34
USP40-213ENST00000483216 NDUFAF4Q9P032 175 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 RNF7Q9UBF6 113 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 LZTS1Q9Y250 596 aa6.67□□□□□ -1.34
USP40-213ENST00000483216 COPG1Q9Y678 874 aaKnown RBP6.67□□□□□ -1.34
USP40-213ENST00000483216 ALDOCP09972 364 aaKnown RBP6.66□□□□□ -1.34
USP40-213ENST00000483216 RNASELQ05823 741 aaKnown RBP6.66□□□□□ -1.34
USP40-213ENST00000483216 SRSF1Q07955 248 aaKnown RBP eCLIP6.66□□□□□ -1.34
USP40-213ENST00000483216 RPS6KA2Q15349 733 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 GALNTL6Q49A17 601 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 LIPMQ5VYY2 423 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 SHC4Q6S5L8 630 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 ANKRD13BQ86YJ7 626 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 PAQR4Q8N4S7 273 aaPredicted RBP6.66□□□□□ -1.34
USP40-213ENST00000483216 NANOGP1Q8N7R0 232 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 TRAPPC12Q8WVT3 735 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 SORBS1Q9BX66 1292 aaKnown RBP6.66□□□□□ -1.34
USP40-213ENST00000483216 SPRTNQ9H040 489 aaPredicted RBP6.66□□□□□ -1.34
USP40-213ENST00000483216 IPO11Q9UI26 975 aaKnown RBP6.66□□□□□ -1.34
USP40-213ENST00000483216 NCAPD3P42695 1498 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 LMTK3Q96Q04 1460 aa6.66□□□□□ -1.34
USP40-213ENST00000483216 TCEA3O75764 348 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 CST5P28325 142 aaPredicted RBP6.65□□□□□ -1.34
USP40-213ENST00000483216 SERPINA4P29622 427 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 RCAN1P53805 252 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 MRPL10Q7Z7H8 261 aaKnown RBP6.65□□□□□ -1.34
USP40-213ENST00000483216 MYCT1Q8N699 235 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 SLC2A12Q8TD20 617 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 CLEC4CQ8WTT0 213 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 ATP2A3Q93084 1043 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 C3orf49Q96BT1 292 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 TRAPPC9Q96Q05 1148 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 PAGR1Q9BTK6 254 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 SCNM1Q9BWG6 230 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 ABHD16BQ9H3Z7 469 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 PTPRHQ9HD43 1115 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 PAPOLBQ9NRJ5 636 aaKnown RBP6.65□□□□□ -1.34
USP40-213ENST00000483216 TMEM45AQ9NWC5 275 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 SRP68Q9UHB9 627 aaKnown RBP6.65□□□□□ -1.34
USP40-213ENST00000483216 PCDHA10Q9Y5I2 948 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 TNFRSF18Q9Y5U5 241 aa6.65□□□□□ -1.34
USP40-213ENST00000483216 ZNF335Q9H4Z2 1342 aaPredicted RBP6.65□□□□□ -1.35
USP40-213ENST00000483216 SMARCA2P51531 1590 aa6.65□□□□□ -1.35
USP40-213ENST00000483216 F8W810 466 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 IPO5O00410 1097 aaKnown RBP6.64□□□□□ -1.35
USP40-213ENST00000483216 PTGER1P34995 402 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 GRK6P43250 576 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 RABEP1Q15276 862 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 RBMS2Q15434 407 aaKnown RBP6.64□□□□□ -1.35
USP40-213ENST00000483216 GRAMD1BQ3KR37 738 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 DGAT2L7PQ6IED9 249 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 JMJD6Q6NYC1 403 aaPredicted RBP6.64□□□□□ -1.35
USP40-213ENST00000483216 ERAP2Q6P179 960 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 PIP4P1Q86T03 277 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 ADGRF4Q8IZF3 695 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 OR6Y1Q8NGX8 325 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 ZFYVE19Q96K21 471 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 PIMREGQ9BSJ6 248 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 ANP32EQ9BTT0 268 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 TUBB6Q9BUF5 446 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 TXNRD2Q9NNW7 524 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 TMLHEQ9NVH6 421 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 PEG3Q9GZU2 1588 aa6.64□□□□□ -1.35
USP40-213ENST00000483216 CCDC88BA6NC98 1476 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 AGAP5A6NIR3 686 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 H0Y3Z8 333 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 PRPF4O43172 522 aaKnown RBP eCLIP6.63□□□□□ -1.35
USP40-213ENST00000483216 HEXIM1O94992 359 aaKnown RBP6.63□□□□□ -1.35
USP40-213ENST00000483216 PCP4P48539 62 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 ADPRHP54922 357 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 B4GALNT1Q00973 533 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 DCTN1Q14203 1278 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 PGM5Q15124 567 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 ZNF793Q6ZN11 406 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.63□□□□□ -1.352e-6■■■□□ 18.9
USP40-213ENST00000483216 GALNT15Q8N3T1 639 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 TRMOQ9BU70 441 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms