RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 USP41Q3LFD5 358 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 PTPN20Q4JDL3 420 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 RAB41Q5JT25 222 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 ZNF569Q5MCW4 686 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 NAA35Q5VZE5 725 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 SLC8B1Q6J4K2 584 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 C11orf63Q6NUN7 778 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 DENND1BQ6P3S1 775 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 CRTC3Q6UUV7 619 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 C4orf50Q6ZRC1 276 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 RTL10Q7L3V2 364 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 DDX53Q86TM3 631 aaKnown RBP5.75□□□□□ -1.49
VPS41-211ENST00000466017 TTC30AQ86WT1 665 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 FUKQ8N0W3 1084 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 SLC35F6Q8N357 371 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 C17orf53Q8N3J3 647 aaPredicted RBP5.75□□□□□ -1.49
VPS41-211ENST00000466017 NIPA2Q8N8Q9 360 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 C12orf29Q8N999 325 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 SPPL2BQ8TCT7 592 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 ATRIPQ8WXE1 791 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 CPA5Q8WXQ8 436 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 ARHGEF26Q96DR7 871 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 PCED1BQ96HM7 432 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 ZNF558Q96NG5 402 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 SAMD11Q96NU1 681 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 ALS2CR12Q96Q35 445 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 LBHD1Q9BQE6 289 aaPredicted RBP5.75□□□□□ -1.49
VPS41-211ENST00000466017 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.75□□□□□ -1.491e-8■■□□□ 11.9
VPS41-211ENST00000466017 HERC2P3Q9BVR0 1158 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 PACSIN1Q9BY11 444 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 B3GNT5Q9BYG0 378 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 TGIF2Q9GZN2 237 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 L2HGDHQ9H9P8 463 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 CRTAC1Q9NQ79 661 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 SEPT11Q9NVA2 429 aaKnown RBP5.75□□□□□ -1.49
VPS41-211ENST00000466017 SPG21Q9NZD8 308 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 IL37Q9NZH6 218 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 FNIP2Q9P278 1114 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 HMGXB4Q9UGU5 601 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 IP6K2Q9UHH9 426 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 PUF60Q9UHX1 559 aaKnown RBP5.75□□□□□ -1.49
VPS41-211ENST00000466017 FBXL21Q9UKT6 434 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 TCFL5Q9UL49 500 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 LZTS1Q9Y250 596 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 RWDD3Q9Y3V2 267 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 NR2E3Q9Y5X4 410 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 ALG6Q9Y672 507 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 SLC4A7Q9Y6M7 1214 aa5.75□□□□□ -1.49
VPS41-211ENST00000466017 ALPK3Q96L96 1907 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 MYBPHLA2RUH7 354 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 GRID2IPA4D2P6 1211 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 CTAGE9A4FU28 777 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 TMCO5BA8MYB1 307 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 MIF4GDA9UHW6 222 aaKnown RBP5.74□□□□□ -1.49
VPS41-211ENST00000466017 HHLA1C9JL84 531 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 C5orf67F2Z3F1 127 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 M0QYV0 167 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 MYO1FO00160 1098 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 ATP2C2O75185 946 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 FBXO21O94952 628 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 CLSTN1O94985 981 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 MOCS3O95396 460 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 FAM200BP0CF97 657 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 KRT3P12035 628 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 ABCB4P21439 1286 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 CTNNA2P26232 953 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 TKTP29401 623 aaKnown RBP5.74□□□□□ -1.49
VPS41-211ENST00000466017 NOP2P46087 812 aaKnown RBP5.74□□□□□ -1.49
VPS41-211ENST00000466017 GATMP50440 423 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 TERF1P54274 439 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 EPHB4P54760 987 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 RNF4P78317 190 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 DEFB103AP81534 67 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 SLC6A3Q01959 620 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 DSG1Q02413 1049 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 CREMQ03060 361 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 PDCLQ13371 301 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 BTG3Q14201 252 aaPredicted RBP5.74□□□□□ -1.49
VPS41-211ENST00000466017 PIGHQ14442 188 aaPredicted RBP5.74□□□□□ -1.49
VPS41-211ENST00000466017 GOLGA7BQ2TAP0 167 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 EFHC1Q5JVL4 640 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 LRRC38Q5VT99 294 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 FAM171A1Q5VUB5 890 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 TPGS2Q68CL5 300 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 PM20D1Q6GTS8 502 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 ZNF280DQ6N043 979 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 PMF1Q6P1K2 205 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 SYT10Q6XYQ8 523 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 CLEC20AQ6ZU45 233 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 OTOP2Q7RTS6 562 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 NT5DC3Q86UY8 548 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 LRRTM3Q86VH5 581 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 XYLT1Q86Y38 959 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 HERC6Q8IVU3 1022 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 C7orf61Q8IZ16 206 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 FIBCD1Q8N539 461 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 ZNF276Q8N554 614 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 TAB3Q8N5C8 712 aaPredicted RBP5.74□□□□□ -1.49
VPS41-211ENST00000466017 POU5F2Q8N7G0 328 aa5.74□□□□□ -1.49
VPS41-211ENST00000466017 COLGALT1Q8NBJ5 622 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms