RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PTGER3P43115 390 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 DGKGP49619 791 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 IRX4P78413 519 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 SHC2P98077 582 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 LMAN2Q12907 356 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 LYSMD4Q5XG99 296 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 EGFLAMQ63HQ2 1017 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 PSAPL1Q6NUJ1 521 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 SLC36A4Q6YBV0 504 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 ARMCX6Q7L4S7 300 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 ADAM32Q8TC27 787 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 NUSAP1Q9BXS6 441 aaKnown RBP18.38■□□□□ 0.53
COL7A1-205ENST00000465238 ABHD10Q9NUJ1 306 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 RRN3Q9NYV6 651 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 ADAMTS1Q9UHI8 967 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 USP24Q9UPU5 2620 aa18.38■□□□□ 0.53
COL7A1-205ENST00000465238 ASCC3Q8N3C0 2202 aaKnown RBP18.37■□□□□ 0.53
COL7A1-205ENST00000465238 A0A1W2PQF6 199 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 PRRT4C9JH25 899 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 CDX4O14627 284 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-205ENST00000465238 RTN2O75298 545 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 TRUB2O95900 331 aaKnown RBP18.37■□□□□ 0.53
COL7A1-205ENST00000465238 PLEKP08567 350 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-205ENST00000465238 HOXD12P35452 270 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 CHKAP35790 457 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 WASP42768 502 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 NOVA1P51513 510 aaKnown RBP18.37■□□□□ 0.53
COL7A1-205ENST00000465238 PTP4A2Q12974 167 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 ARID5BQ14865 1188 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 TRIM61Q5EBN2 209 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 MON1BQ7L1V2 547 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 TAC4Q86UU9 113 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 DENND1CQ8IV53 801 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 UNC45BQ8IWX7 931 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 MCOLN2Q8IZK6 566 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 VCPIP1Q96JH7 1222 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 GABRG3Q99928 467 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 SELENOOQ9BVL4 669 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 FAM204AQ9H8W3 233 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 METTL5Q9NRN9 209 aaKnown RBP18.37■□□□□ 0.53
COL7A1-205ENST00000465238 TAS2R14Q9NYV8 317 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 CALCOCO1Q9P1Z2 691 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 STAP1Q9ULZ2 295 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 TLR6Q9Y2C9 796 aa18.37■□□□□ 0.53
COL7A1-205ENST00000465238 GFRA2O00451 464 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 ZNF217O75362 1048 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 FTLP02792 175 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-205ENST00000465238 KLKB1P03952 638 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 CISD3P0C7P0 127 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 RPL6Q02878 288 aaKnown RBP18.36■□□□□ 0.53
COL7A1-205ENST00000465238 RING1Q06587 406 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 NNTQ13423 1086 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 ST3GAL2Q16842 350 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 PEAR1Q5VY43 1037 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-205ENST00000465238 NUGGCQ68CJ6 796 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 SLC23A3Q6PIS1 610 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 WDR59Q6PJI9 974 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 RNF34Q969K3 372 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 ACOX2Q99424 681 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 CD248Q9HCU0 757 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 TMEM74BQ9NUR3 256 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 DDIT4Q9NX09 232 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 ARHGAP20Q9P2F6 1191 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 TMEM59LQ9UK28 342 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 FBXO10Q9UK96 956 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 PILRBQ9UKJ0 227 aa18.36■□□□□ 0.53
COL7A1-205ENST00000465238 AGO1Q9UL18 857 aaKnown RBP18.36■□□□□ 0.53
COL7A1-205ENST00000465238 SYNJ2BP-COX16A0A087WUM0 186 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 IRAK2O43187 625 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 ADCY5O95622 1261 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 PENKP01210 267 aaPredicted RBP18.35■□□□□ 0.53
COL7A1-205ENST00000465238 KRT3P12035 628 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 CSRP1P21291 193 aaKnown RBP18.35■□□□□ 0.53
COL7A1-205ENST00000465238 EIF4A3P38919 411 aaKnown RBP18.35■□□□□ 0.53
COL7A1-205ENST00000465238 GSCP56915 257 aaPredicted RBP18.35■□□□□ 0.53
COL7A1-205ENST00000465238 SH3PXD2AQ5TCZ1 1133 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 DNAJC24Q6P3W2 148 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 ARCQ7LC44 396 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 C3orf20Q8ND61 904 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 BHMTQ93088 406 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 DEF6Q9H4E7 631 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 PLK2Q9NYY3 685 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 COX16Q9P0S2 106 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 SLC27A6Q9Y2P4 619 aa18.35■□□□□ 0.53
COL7A1-205ENST00000465238 IGHV1OR15-9A0A0B4J2B8 117 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 ANKRD62A6NC57 917 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 M0QYT0 321 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 F9P00740 461 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 IGLV3-25P01717 112 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 IGLV3-27P01718 113 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 APOEP02649 317 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 SLC2A3P11169 496 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 CEACAM1P13688 526 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 NDUFV2P19404 249 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 ITPKAP23677 461 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 RRM1P23921 792 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 FLT3P36888 993 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 SLC11A2P49281 568 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 SULT1E1P49888 294 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 PITX1P78337 314 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms