RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 SPACA7Q96KW9 195 aa13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 C11orf70Q9BRQ4 267 aa13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 MKRN2Q9H000 416 aaKnown RBP13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 SIK2Q9H0K1 926 aa13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 TMEM245Q9H330 911 aa13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 WDCPQ9H6R7 721 aa13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 ARHGEF38Q9NXL2 777 aa13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 HS3ST4Q9Y661 456 aa13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 TNRC6BQ9UPQ9 1833 aaKnown RBP13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 CFAP54Q96N23 3096 aa13.17□□□□□ -0.3
PRPF40A-203ENST00000448428 GVINP1Q7Z2Y8 2422 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 A0A1W2PQC6 194 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 BCLAF3A2AJT9 711 aaKnown RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 I6L893 689 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 SYNCRIPO60506 623 aaKnown RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 F9P00740 461 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 SERPINC1P01008 464 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 EPHX1P07099 455 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 ZNF806P0C7X5 589 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 CSKP41240 450 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 IRAK1P51617 712 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 ATXN1P54253 815 aaKnown RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 CREB5Q02930 508 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 CENPCQ03188 943 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 DEUP1Q05D60 604 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 MTA1Q13330 715 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 SKOR2Q2VWA4 1001 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 FNDC3BQ53EP0 1204 aaKnown RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 BRMS1LQ5PSV4 323 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 PLA2G2CQ5R387 149 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 PRR23CQ6ZRP0 262 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 SND1Q7KZF4 910 aaKnown RBP eCLIP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 BNIPLQ7Z465 357 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 CIR1Q86X95 450 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 PHF13Q86YI8 300 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 TMPRSS6Q8IU80 811 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 CCDC117Q8IWD4 279 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 TMEFF1Q8IYR6 380 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 APCDD1Q8J025 514 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 CCAR2Q8N163 923 aaKnown RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 EMC1Q8N766 993 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 ZNF366Q8N895 744 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 RMDN1Q96DB5 314 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 CFAP57Q96MR6 1250 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 TKTL2Q9H0I9 626 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 SMOC1Q9H4F8 434 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 PRDM16Q9HAZ2 1276 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 CD93Q9NPY3 652 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 METTL5Q9NRN9 209 aaKnown RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 TMPRSS4Q9NRS4 437 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 SEPT11Q9NVA2 429 aaKnown RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 ADAM22Q9P0K1 906 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 KIAA1522Q9P206 1035 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 VANGL2Q9ULK5 521 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 MYO6Q9UM54 1294 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 PCDHGA5Q9Y5G8 931 aa13.16□□□□□ -0.3
PRPF40A-203ENST00000448428 FRYLO94915 3013 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 DOCK4Q8N1I0 1966 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 IGHV1OR15-9A0A0B4J2B8 117 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 ZNF217O75362 1048 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 ENDOD1O94919 500 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 GJB6O95452 261 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 CAVIN2O95810 425 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 CCDC172P0C7W6 258 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 GGCXP38435 758 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 MPLP40238 635 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 NSFP46459 744 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 ID4P47928 161 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 DHPSP49366 369 aaPredicted RBP13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 COPAP53621 1224 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 FANCCQ00597 558 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 LMNB2Q03252 620 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 CAMK2GQ13555 558 aaPredicted RBP13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 SF3A2Q15428 464 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 C5orf22Q49AR2 442 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 RAB6CQ53S08 254 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 PITRM1Q5JRX3 1037 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 RABGAP1LQ5R372 815 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 KIAA1324Q6UXG2 1013 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 LPCAT2Q7L5N7 544 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 METTL3Q86U44 580 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 DEFB119Q8N690 84 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 MYO19Q96H55 970 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 RPRD1AQ96P16 312 aaPredicted RBP13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 SYT11Q9BT88 431 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 RAB6CQ9H0N0 254 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 TMEM51Q9NW97 253 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 CYP8B1Q9UNU6 501 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 SNX10Q9Y5X0 201 aa13.15□□□□□ -0.3
PRPF40A-203ENST00000448428 ZNF292O60281 2723 aa13.14□□□□□ -0.31
PRPF40A-203ENST00000448428 A0A1B0GVM2 712 aa13.14□□□□□ -0.31
PRPF40A-203ENST00000448428 TCAF2A6NFQ2 919 aa13.14□□□□□ -0.31
PRPF40A-203ENST00000448428 C2CD4BA6NLJ0 364 aa13.14□□□□□ -0.31
PRPF40A-203ENST00000448428 LRRC53A6NM62 1247 aa13.14□□□□□ -0.31
PRPF40A-203ENST00000448428 PRR5-ARHGAP8B1AHC4 643 aa13.14□□□□□ -0.31
PRPF40A-203ENST00000448428 ASLP04424 464 aa13.14□□□□□ -0.31
PRPF40A-203ENST00000448428 PDGFRAP16234 1089 aa13.14□□□□□ -0.31
PRPF40A-203ENST00000448428 MZF1P28698 734 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms