RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SLC12A6Q9UHW9 1150 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 SLC27A6Q9Y2P4 619 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 PAXBP1Q9Y5B6 917 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 ADGRG1Q9Y653 693 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 DUSP10Q9Y6W6 482 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 KMT2EQ8IZD2 1858 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 BTNL10A8MVZ5 291 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 GOLGA6L6A8MZA4 724 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 K7EQS6 105 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 MYO1FO00160 1098 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 CNTN5O94779 1100 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 HOXC13P31276 330 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 SLC25A11Q02978 314 aaKnown RBP12.83□□□□□ -0.36
USP40-205ENST00000430158 SPA17Q15506 151 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 CA9Q16790 459 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 ACBD5Q5T8D3 534 aaPredicted RBP12.83□□□□□ -0.36
USP40-205ENST00000430158 TXNRD3NBQ6F5E7 133 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 SLFN11Q7Z7L1 901 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 CHSY1Q86X52 802 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 RHOT2Q8IXI1 618 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 CFAP52Q8N1V2 620 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 PYROXD2Q8N2H3 581 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.83□□□□□ -0.36
USP40-205ENST00000430158 NAT16Q8N8M0 369 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 HJURPQ8NCD3 748 aaPredicted RBP12.83□□□□□ -0.36
USP40-205ENST00000430158 PJA1Q8NG27 643 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 CD101Q93033 1021 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 BHMTQ93088 406 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 NELL2Q99435 816 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 DESI2Q9BSY9 194 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 SLC2A11Q9BYW1 496 aa12.83□□□□□ -0.36
USP40-205ENST00000430158 FAM86C2PA6NEL3 165 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 FAM170BA6NMN3 283 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 F5H5T6 163 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 ARHGAP6O43182 974 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 TBL1XO60907 577 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 EGFP01133 1207 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 AOC1P19801 751 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 L1CAMP32004 1257 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 MAN1A1P33908 653 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 ARHGAP25P42331 645 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 ARSEP51690 589 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 CLCN5P51795 746 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 VAV2P52735 878 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 AIF1P55008 147 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 TAS2R40P59535 323 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 AMPD2Q01433 879 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 GAS6Q14393 721 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 ALFQ53S48 1182 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 FSCBQ5H9T9 825 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 TMEM215Q68D42 235 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 CXorf57Q6NSI4 855 aaKnown RBP12.82□□□□□ -0.36
USP40-205ENST00000430158 PSTKQ8IV42 348 aaKnown RBP12.82□□□□□ -0.36
USP40-205ENST00000430158 SUGP1Q8IWZ8 645 aaKnown RBP12.82□□□□□ -0.36
USP40-205ENST00000430158 CCDC112Q8NEF3 446 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 OR52K2Q8NGK3 314 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 FIBINQ8TAL6 211 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 DDI1Q8WTU0 396 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 ALG14Q96F25 216 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 PNKPQ96T60 521 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 NCAPGQ9BPX3 1015 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 SNRNP25Q9BV90 132 aaKnown RBP12.82□□□□□ -0.36
USP40-205ENST00000430158 SIK2Q9H0K1 926 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 KCNF1Q9H3M0 494 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 DNAJC17Q9NVM6 304 aaKnown RBP12.82□□□□□ -0.36
USP40-205ENST00000430158 GPATCH2LQ9NWQ4 482 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 DEC1Q9P2X7 70 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 PPARGC1AQ9UBK2 798 aaKnown RBP12.82□□□□□ -0.36
USP40-205ENST00000430158 OR12D3Q9UGF7 316 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 PCSK1NQ9UHG2 260 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 INTS6Q9UL03 887 aaKnown RBP12.82□□□□□ -0.36
USP40-205ENST00000430158 VANGL2Q9ULK5 521 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 USP18Q9UMW8 372 aa12.82□□□□□ -0.36
USP40-205ENST00000430158 PRRT4C9JH25 899 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 E9PAM4 449 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 RIOK3O14730 519 aaKnown RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 RNF8O76064 485 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 LRIG2O94898 1065 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 LUC7L3O95232 432 aaKnown RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 KAT7O95251 611 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 CYBBP04839 570 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 DRD1P21728 446 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 HLA-FP30511 346 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 GRIA2P42262 883 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 KIR2DL1P43626 348 aaPredicted RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 RPS9P46781 194 aaKnown RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 GEN1Q17RS7 908 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 ARL13BQ3SXY8 428 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 ERMARDQ5T6L9 678 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 SCYL2Q6P3W7 929 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 NLRP14Q86W24 1093 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 CIR1Q86X95 450 aaPredicted RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 CCAR2Q8N163 923 aaKnown RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 FBXL6Q8N531 539 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 TMEM105Q8N8V8 129 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 TERB1Q8NA31 727 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 FAM71BQ8TC56 605 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 PBXIP1Q96AQ6 731 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 XPO6Q96QU8 1125 aaKnown RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 PPP1R9BQ96SB3 815 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms