RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 MAN1C1Q9NR34 630 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 ARHGEF4Q9NR80 690 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 ANGPTL2Q9UKU9 493 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3DA0A087WVF3 549 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3IA0A087WXS9 549 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3EA0A087X179 549 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3KA0A087X1G2 549 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3FA6NER0 549 aaPredicted RBP10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3LB9A6J9 549 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 SNX2O60749 519 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3HP0C7X1 549 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 MAP4P27816 1152 aaKnown RBP10.92□□□□□ -0.66
TCOF1-204ENST00000427724 RFC1P35251 1148 aaPredicted RBP10.92□□□□□ -0.66
TCOF1-204ENST00000427724 SLC11A1P49279 550 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 LILRA4P59901 499 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 HYIQ5T013 277 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3GQ6DHY5 549 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3CQ6IPX1 549 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 RCOR2Q8IZ40 523 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D3Q8IZP1 549 aaPredicted RBP10.92□□□□□ -0.66
TCOF1-204ENST00000427724 EIF1ADQ8N9N8 165 aaKnown RBP10.92□□□□□ -0.66
TCOF1-204ENST00000427724 TKTL2Q9H0I9 626 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 CHST7Q9NS84 486 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 GVINP1Q7Z2Y8 2422 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 MYH6P13533 1939 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 BTNL10A8MVZ5 291 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 GJB6O95452 261 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 ARFIP2P53365 341 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 GEMIN4P57678 1058 aaKnown RBP10.92□□□□□ -0.66
TCOF1-204ENST00000427724 CYP4F8P98187 520 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 NFIL3Q16649 462 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 DOK6Q6PKX4 331 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 CNPY3Q9BT09 278 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 SCUBE2Q9NQ36 999 aa10.92□□□□□ -0.66
TCOF1-204ENST00000427724 DUS2Q9NX74 493 aaKnown RBP10.92□□□□□ -0.66
TCOF1-204ENST00000427724 DNAJC8O75937 253 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 TTC4O95801 387 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 DNTTP04053 509 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 PAX3P23760 479 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 ITIH4Q14624 930 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 SLC45A4Q5BKX6 768 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 TMCO4Q5TGY1 634 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 ERAP2Q6P179 960 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 LRRC57Q8N9N7 239 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 SNRNP27Q8WVK2 155 aaKnown RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 PGM2Q96G03 612 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 TRMT61BQ9BVS5 477 aaKnown RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 MINDY3Q9H8M7 445 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 AKAP7Q9P0M2 348 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 SFMBT1Q9UHJ3 866 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 H0YGN5 161 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 ERMARDQ5T6L9 678 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 DUPD1Q68J44 220 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 KLC3Q6P597 504 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 EPS8L1Q8TE68 723 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 MRPL45Q9BRJ2 306 aaKnown RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 ZDHHC6Q9H6R6 413 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 POPDC2Q9HBU9 364 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 TRPM3Q9HCF6 1732 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 SYN3O14994 580 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 EPHX1P07099 455 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 HIST1H2AGP0C0S8 130 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 HIST1H2ADP20671 130 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 OVGP1Q12889 678 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 EGFL6Q8IUX8 553 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 AGGF1Q8N302 714 aaeCLIP10.91□□□□□ -0.665e-10■■□□□ 11.4
TCOF1-204ENST00000427724 USP13Q92995 863 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 HIST1H2AHQ96KK5 128 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 HIST1H2AJQ99878 128 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 APOL2Q9BQE5 337 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 C16orf70Q9BSU1 422 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 H2AFJQ9BTM1 129 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 RBM22Q9NW64 420 aaKnown RBP eCLIP10.91□□□□□ -0.664e-6■■■■□ 24.3
TCOF1-204ENST00000427724 AJAP1Q9UKB5 411 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-204ENST00000427724 NAALADL1Q9UQQ1 740 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 SLX4Q8IY92 1834 aa10.91□□□□□ -0.66
TCOF1-204ENST00000427724 SMARCB1Q12824 385 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 GRSF1Q12849 480 aaKnown RBP eCLIP10.9□□□□□ -0.66
TCOF1-204ENST00000427724 KLHL38Q2WGJ6 581 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 HSP90AA5PQ58FG0 334 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 DAB2IPQ5VWQ8 1189 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 FOXR2Q6PJQ5 311 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 LVRNQ6Q4G3 990 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 VSTM1Q6UX27 236 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 ZNF557Q8N988 423 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-204ENST00000427724 MAGEB10Q96LZ2 347 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-204ENST00000427724 PWWP2AQ96N64 755 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 WHRNQ9P202 907 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 TBC1D14Q9P2M4 693 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 CHMP2BQ9UQN3 213 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 PITPNM1O00562 1244 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 CNMDO75829 334 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 CFIP05156 583 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 DAB2P98082 770 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 ACOX1Q15067 660 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 LRRC26Q2I0M4 334 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 UAP1L1Q3KQV9 507 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 MARC1Q5VT66 337 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 SHDQ96IW2 340 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 VPS11Q9H270 941 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms