RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 NCAM2O15394 837 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 DDX3YO15523 660 aaKnown RBP10.4□□□□□ -0.74
CD44-207ENST00000425428 NEBLO76041 1014 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 KLKB1P03952 638 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 TCF4P15884 667 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 MX2P20592 715 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 TGM2P21980 687 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 CXCR5P32302 372 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 PTPN7P35236 360 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 NR2C2P49116 596 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 MAPKAPK2P49137 400 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 ATP13A4Q4VNC1 1196 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 RAB6CQ53S08 254 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 FBXL22Q6P050 247 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 CHST9Q7L1S5 443 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 PYROXD2Q8N2H3 581 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 CARNMT1Q8N4J0 409 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 RAPGEF5Q92565 580 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 CSPG4P5Q96PW8 444 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 RNF157Q96PX1 679 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 ADAM33Q9BZ11 813 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 FRMD8P1Q9BZ68 369 aaPredicted RBP10.4□□□□□ -0.74
CD44-207ENST00000425428 RAB6CQ9H0N0 254 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 CWC15Q9P013 229 aaKnown RBP10.4□□□□□ -0.74
CD44-207ENST00000425428 LIMD1Q9UGP4 676 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 WNT6Q9Y6F9 365 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 NUMBLQ9Y6R0 609 aa10.4□□□□□ -0.74
CD44-207ENST00000425428 GOLGA6L7A0A1B0GV03 622 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ARHGAP42A6NI28 874 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 C2CD4DB7Z1M9 353 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 NEDD8-MDP1E9PL57 170 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 SCAMP3O14828 347 aaKnown RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 PPP1R12AO14974 1030 aaPredicted RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 CST8O60676 142 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 FGGP02679 453 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 RHOCP08134 193 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 PYGMP11217 842 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ADH5P11766 374 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 CDKN2BP42772 138 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 DYNLT1P63172 113 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 FCHO2Q0JRZ9 810 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ZNF211Q13398 564 aaPredicted RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 GRM2Q14416 872 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ITPRIPL2Q3MIP1 535 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 FAM133BQ5BKY9 247 aaKnown RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 TXNRD3NBQ6F5E7 133 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 CCDC70Q6NSX1 233 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 RFWD3Q6PCD5 774 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 PARM1Q6UWI2 310 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 MFSD7Q6UXD7 560 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 VITQ6UXI7 678 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 LRRC49Q8IUZ0 686 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 MFN1Q8IWA4 741 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 RTL3Q8N8U3 475 aaKnown RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 ADAMTS19Q8TE59 1207 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ALG3Q92685 438 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 CAPZA3Q96KX2 299 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 HEMGNQ9BXL5 484 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 TMPRSS4Q9NRS4 437 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 FEZ2Q9UHY8 353 aaPredicted RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 DRGXA6NNA5 263 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 TRDMT1O14717 391 aaKnown RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 MCF2LO15068 1137 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 RAMP2O60895 175 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ERCC2P18074 760 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 AMPD1P23109 780 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ACTN2P35609 894 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 MARCKSL1P49006 195 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 YBEYP58557 167 aaPredicted RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 LMNB2Q03252 620 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 SLC12A1Q13621 1099 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 HTR4Q13639 388 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 RUNX3Q13761 415 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 PDK1Q15118 436 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 DHCR24Q15392 516 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 CA9Q16790 459 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 NADSYN1Q6IA69 706 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 C1orf228Q6PIY5 440 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ZNF783Q6ZMS7 281 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 SETD3Q86TU7 594 aaPredicted RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 CPNE8Q86YQ8 564 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ADHFE1Q8IWW8 467 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 FAM217AQ8IXS0 508 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ADGRG2Q8IZP9 1017 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 FAM71BQ8TC56 605 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 ACTRT1Q8TDG2 376 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 FGF14Q92915 247 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 BHMTQ93088 406 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 RUNDC3BQ96NL0 473 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 PRMT1Q99873 361 aaKnown RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 SLC2A11Q9BYW1 496 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 BRD8Q9H0E9 1235 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 MUC3BQ9H195 1237 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 TMEM248Q9NWD8 314 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 KIAA1522Q9P206 1035 aaPredicted RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 XPO7Q9UIA9 1087 aaKnown RBP10.39□□□□□ -0.75
CD44-207ENST00000425428 HEY1Q9Y5J3 304 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 MYO10Q9HD67 2058 aa10.39□□□□□ -0.75
CD44-207ENST00000425428 MYOFQ9NZM1 2061 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms