RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 SLC38A8A6NNN8 435 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 KCNK1O00180 336 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 ZNF189O75820 626 aaPredicted RBP27.25■■□□□ 1.95
LDB1-202ENST00000425280 TBX18O95935 607 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 GARSP41250 739 aaKnown RBP27.25■■□□□ 1.95
LDB1-202ENST00000425280 TBX4P57082 545 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 ZNF534Q76KX8 674 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 SLC39A11Q8N1S5 342 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 ARHGEF2Q92974 986 aaKnown RBP27.25■■□□□ 1.95
LDB1-202ENST00000425280 TBC1D31Q96DN5 1066 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 CNOT10Q9H9A5 744 aaKnown RBP27.25■■□□□ 1.95
LDB1-202ENST00000425280 TBK1Q9UHD2 729 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 F5H423 210 aaPredicted RBP27.25■■□□□ 1.95
LDB1-202ENST00000425280 SOD2P04179 222 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 ATP5DP30049 168 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 PKN2Q16513 984 aaKnown RBP27.25■■□□□ 1.95
LDB1-202ENST00000425280 TDRPQ86YL5 185 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 RIBC1Q8N443 379 aaPredicted RBP27.25■■□□□ 1.95
LDB1-202ENST00000425280 DEPDC1BQ8WUY9 529 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 CLSTN3Q9BQT9 956 aa27.25■■□□□ 1.95
LDB1-202ENST00000425280 OLA1Q9NTK5 396 aaKnown RBP27.25■■□□□ 1.95
LDB1-202ENST00000425280 NUP205Q92621 2012 aa27.24■■□□□ 1.95
LDB1-202ENST00000425280 POC1B-GALNT4F8VUJ3 575 aa27.24■■□□□ 1.95
LDB1-202ENST00000425280 SLC2A3P11169 496 aa27.24■■□□□ 1.95
LDB1-202ENST00000425280 RAG1P15918 1043 aa27.24■■□□□ 1.95
LDB1-202ENST00000425280 PTPN3P26045 913 aa27.24■■□□□ 1.95
LDB1-202ENST00000425280 MAGEA3P43357 314 aa27.24■■□□□ 1.95
LDB1-202ENST00000425280 NRG1Q02297 640 aaPredicted RBP27.24■■□□□ 1.95
LDB1-202ENST00000425280 DNAJC5GQ8N7S2 189 aa27.24■■□□□ 1.95
LDB1-202ENST00000425280 CELF6Q96J87 481 aaKnown RBP27.24■■□□□ 1.95
LDB1-202ENST00000425280 FOXO6A8MYZ6 492 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 FGF10O15520 208 aaPredicted RBP27.23■■□□□ 1.95
LDB1-202ENST00000425280 ZDHHC11BP0C7U3 371 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 PIK3R6Q5UE93 754 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 LRRC31Q6UY01 552 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 TAOK1Q7L7X3 1001 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 NECAB2Q7Z6G3 386 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 C14orf80Q86SX3 495 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 MDM1Q8TC05 714 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 FBF1Q8TES7 1133 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 SELENOSQ9BQE4 189 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 TTLL2Q9BWV7 592 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 MRPL42Q9Y6G3 142 aaKnown RBP27.23■■□□□ 1.95
LDB1-202ENST00000425280 ACRP10323 421 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 PSMB4P28070 264 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 LSP1P33241 339 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 MLLT6P55198 1093 aaPredicted RBP27.23■■□□□ 1.95
LDB1-202ENST00000425280 BTG3Q14201 252 aaPredicted RBP27.23■■□□□ 1.95
LDB1-202ENST00000425280 PARP6Q2NL67 630 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 C10orf120Q5SQS8 335 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 TMEM169Q96HH4 297 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 C1orf74Q96LT6 269 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 ACSS3Q9H6R3 686 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 CATSPERBQ9H7T0 1116 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 IGSF9Q9P2J2 1179 aa27.23■■□□□ 1.95
LDB1-202ENST00000425280 MYO18AQ92614 2054 aaKnown RBP27.23■■□□□ 1.95
LDB1-202ENST00000425280 E9PAM4 449 aa27.22■■□□□ 1.95
LDB1-202ENST00000425280 ATP2A2P16615 1042 aaKnown RBP27.22■■□□□ 1.95
LDB1-202ENST00000425280 TUBP50607 506 aa27.22■■□□□ 1.95
LDB1-202ENST00000425280 DSG1Q02413 1049 aa27.22■■□□□ 1.95
LDB1-202ENST00000425280 TRIP4Q15650 581 aaPredicted RBP27.22■■□□□ 1.95
LDB1-202ENST00000425280 LEKR1Q6ZMV7 388 aa27.22■■□□□ 1.95
LDB1-202ENST00000425280 CMTR2Q8IYT2 770 aaKnown RBP27.22■■□□□ 1.95
LDB1-202ENST00000425280 MAML1Q92585 1016 aa27.22■■□□□ 1.95
LDB1-202ENST00000425280 PPCSQ9HAB8 311 aa27.22■■□□□ 1.95
LDB1-202ENST00000425280 MARCH2Q9P0N8 246 aa27.22■■□□□ 1.95
LDB1-202ENST00000425280 MAGED2Q9UNF1 606 aaPredicted RBP27.22■■□□□ 1.95
LDB1-202ENST00000425280 KIAA0100Q14667 2235 aaKnown RBP27.22■■□□□ 1.95
LDB1-202ENST00000425280 EFCAB14O75071 495 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 GRIA1P42261 906 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 TUFMP49411 452 aaKnown RBP27.21■■□□□ 1.95
LDB1-202ENST00000425280 TMED2Q15363 201 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 PID1Q7Z2X4 250 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 XAB2Q9HCS7 855 aaKnown RBP27.21■■□□□ 1.95
LDB1-202ENST00000425280 EIF2B3Q9NR50 452 aaKnown RBP27.21■■□□□ 1.95
LDB1-202ENST00000425280 KLHL8Q9P2G9 620 aaPredicted RBP27.21■■□□□ 1.95
LDB1-202ENST00000425280 AFF4Q9UHB7 1163 aaKnown RBP27.21■■□□□ 1.95
LDB1-202ENST00000425280 SLC24A2Q9UI40 661 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 ERICH4A6NGS2 130 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 MTSS1O43312 755 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 SEC24AO95486 1093 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 CDK16Q00536 496 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 EFTUD2Q15029 972 aaKnown RBP eCLIP27.21■■□□□ 1.953e-10■■■■□ 23.5
LDB1-202ENST00000425280 MIB1Q86YT6 1006 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 ARHGAP12Q8IWW6 846 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 TMEM199Q8N511 208 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 PDCD7Q8N8D1 485 aaKnown RBP27.21■■□□□ 1.95
LDB1-202ENST00000425280 CEP295NLQ96MC4 621 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 HERC2P3Q9BVR0 1158 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 FETUBQ9UGM5 382 aa27.21■■□□□ 1.95
LDB1-202ENST00000425280 APOEP02649 317 aa27.2■■□□□ 1.95
LDB1-202ENST00000425280 LAG3P18627 525 aa27.2■■□□□ 1.95
LDB1-202ENST00000425280 GEMIN4P57678 1058 aaKnown RBP27.2■■□□□ 1.95
LDB1-202ENST00000425280 GLIPR1L2Q4G1C9 344 aa27.2■■□□□ 1.95
LDB1-202ENST00000425280 TADA2BQ86TJ2 420 aa27.2■■□□□ 1.95
LDB1-202ENST00000425280 DPF3Q92784 378 aa27.2■■□□□ 1.95
LDB1-202ENST00000425280 LRRC39Q96DD0 335 aa27.2■■□□□ 1.95
LDB1-202ENST00000425280 XPO6Q96QU8 1125 aaKnown RBP27.2■■□□□ 1.95
LDB1-202ENST00000425280 UBE2OQ9C0C9 1292 aaKnown RBP27.2■■□□□ 1.95
LDB1-202ENST00000425280 CCSER2Q9H7U1 834 aa27.2■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms