RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 BECN2A8MW95 431 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 NPC1O15118 1278 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 GNA14O95837 355 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 ITPKBP27987 946 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 PSMC2P35998 433 aaKnown RBP13.42□□□□□ -0.26
LINC00339-202ENST00000416769 CTSOP43234 321 aaPredicted RBP13.42□□□□□ -0.26
LINC00339-202ENST00000416769 CTSKP43235 329 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 MXI1P50539 228 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 MCCD1P59942 119 aaPredicted RBP13.42□□□□□ -0.26
LINC00339-202ENST00000416769 NCAPHQ15003 741 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 MPPE1Q53F39 396 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 FAM133BQ5BKY9 247 aaKnown RBP13.42□□□□□ -0.26
LINC00339-202ENST00000416769 BSPRYQ5W0U4 402 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 NADSYN1Q6IA69 706 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 IL27RAQ6UWB1 636 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 KIAA0907Q7Z7F0 614 aaPredicted RBP13.42□□□□□ -0.26
LINC00339-202ENST00000416769 DHX40Q8IX18 779 aaKnown RBP13.42□□□□□ -0.26
LINC00339-202ENST00000416769 ANKRD52Q8NB46 1076 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 TFAP2BQ92481 460 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 LMLNQ96KR4 655 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 DCBLD2Q96PD2 775 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 CDK5RAP1Q96SZ6 601 aaKnown RBP13.42□□□□□ -0.26
LINC00339-202ENST00000416769 SLC2A11Q9BYW1 496 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 THAP9Q9H5L6 903 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 STIM2Q9P246 746 aa13.42□□□□□ -0.26
LINC00339-202ENST00000416769 INTS6Q9UL03 887 aaKnown RBP13.42□□□□□ -0.26
LINC00339-202ENST00000416769 SETXQ7Z333 2677 aaKnown RBP13.41□□□□□ -0.26
LINC00339-202ENST00000416769 PLK4O00444 970 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 SLC16A3O15427 465 aaKnown RBP13.41□□□□□ -0.26
LINC00339-202ENST00000416769 TBL1XO60907 577 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 KRT13P13646 458 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 LCP1P13796 627 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 CD27P26842 260 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 GRIA4P48058 902 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 CCT8P50990 548 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 ZNF132P52740 706 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 METAP1P53582 386 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 RPS24P62847 133 aaKnown RBP13.41□□□□□ -0.26
LINC00339-202ENST00000416769 ENPEPQ07075 957 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 LRMPQ12912 555 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 KCNJ12Q14500 433 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 SMAD1Q15797 465 aaKnown RBP13.41□□□□□ -0.26
LINC00339-202ENST00000416769 KRT39Q6A163 491 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 ARHGAP18Q8N392 663 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 AOPEPQ8N6M6 819 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.41□□□□□ -0.26
LINC00339-202ENST00000416769 PIP4K2CQ8TBX8 421 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 TMA16Q96EY4 203 aaKnown RBP13.41□□□□□ -0.26
LINC00339-202ENST00000416769 CDC6Q99741 560 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 BTBD1Q9H0C5 482 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 METTL14Q9HCE5 456 aaKnown RBP13.41□□□□□ -0.26
LINC00339-202ENST00000416769 FANCLQ9NW38 375 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 RAB20Q9NX57 234 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 STOML2Q9UJZ1 356 aa13.41□□□□□ -0.26
LINC00339-202ENST00000416769 NYNRINQ9P2P1 1898 aaKnown RBP13.41□□□□□ -0.26
LINC00339-202ENST00000416769 FLNBO75369 2602 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 A0A1W2PP55 124 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 O00370 1275 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 XPO1O14980 1071 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 MID1O15344 667 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 TNFSF14O43557 240 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 SIN3BO75182 1162 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 DLDP09622 509 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 C7P10643 843 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 EPB41P11171 864 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 CD19P15391 556 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 HARS2P49590 506 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 MARSP56192 900 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 FSCBQ5H9T9 825 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 ADGRF1Q5T601 910 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 PIK3R6Q5UE93 754 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 KIAA0895LQ68EN5 471 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 NCEH1Q6PIU2 408 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 GAS2L3Q86XJ1 694 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 IRF2BP1Q8IU81 584 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 FAM114A1Q8IWE2 563 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 AHI1Q8N157 1196 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 UBR7Q8N806 425 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 FBXL13Q8NEE6 735 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 WFIKKN2Q8TEU8 576 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 KAT5Q92993 513 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 IGSF8Q969P0 613 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 MRGPRX3Q96LB0 322 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 UBXN6Q9BZV1 441 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 PABPC3Q9H361 631 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 LRRC4Q9HBW1 653 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 SCUBE2Q9NQ36 999 aa13.4□□□□□ -0.26
LINC00339-202ENST00000416769 SAMSN1Q9NSI8 373 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 XPO7Q9UIA9 1087 aaKnown RBP13.4□□□□□ -0.26
LINC00339-202ENST00000416769 A0A1B0GTQ1 180 aa13.39□□□□□ -0.27
LINC00339-202ENST00000416769 TTC34A8MYJ7 566 aa13.39□□□□□ -0.27
LINC00339-202ENST00000416769 GOLGA6L19H0YKK7 550 aa13.39□□□□□ -0.27
LINC00339-202ENST00000416769 TIMM44O43615 452 aa13.39□□□□□ -0.27
LINC00339-202ENST00000416769 TLX3O43711 291 aaPredicted RBP13.39□□□□□ -0.27
LINC00339-202ENST00000416769 PCDHGA12O60330 932 aa13.39□□□□□ -0.27
LINC00339-202ENST00000416769 C1QL1O75973 258 aa13.39□□□□□ -0.27
LINC00339-202ENST00000416769 IGLV3-27P01718 113 aa13.39□□□□□ -0.27
LINC00339-202ENST00000416769 DNTTP04053 509 aa13.39□□□□□ -0.27
LINC00339-202ENST00000416769 TRIM21P19474 475 aaKnown RBP13.39□□□□□ -0.27
LINC00339-202ENST00000416769 CSKP41240 450 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms