RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ITGA2BP08514 1039 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 ACAT1P24752 427 aaKnown RBP10.05□□□□□ -0.8
CD44-206ENST00000415148 ARL4AP40617 200 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 ABCE1P61221 599 aaKnown RBP10.05□□□□□ -0.8
CD44-206ENST00000415148 CUL3Q13618 768 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 FSCBQ5H9T9 825 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 SPANXN3Q5MJ09 141 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 DHDDSQ86SQ9 333 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 ACOT1Q86TX2 421 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 HPS6Q86YV9 775 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 PIP4K2CQ8TBX8 421 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 SLC26A7Q8TE54 656 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 ARNTL2Q8WYA1 636 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 NCSTNQ92542 709 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 MOCOSQ96EN8 888 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 CPB2Q96IY4 423 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 KCTD15Q96SI1 283 aaPredicted RBP10.05□□□□□ -0.8
CD44-206ENST00000415148 NDNQ99608 321 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 CPNE1Q99829 537 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 PDGFDQ9GZP0 370 aaPredicted RBP10.05□□□□□ -0.8
CD44-206ENST00000415148 DNAI2Q9GZS0 605 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 RNPEPQ9H4A4 650 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 ACSS2Q9NR19 701 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 COPG2Q9UBF2 871 aa10.05□□□□□ -0.8
CD44-206ENST00000415148 LOC100653049A0A140TA62 436 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 ZNF195O14628 629 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 KRT34O76011 436 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 PGM3O95394 542 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 POLBP06746 335 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 TXNP10599 105 aaKnown RBP10.04□□□□□ -0.8
CD44-206ENST00000415148 RALBP11234 206 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 INSRRP14616 1297 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 GP5P40197 560 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 INHBCP55103 352 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 BST2Q10589 180 aaKnown RBP10.04□□□□□ -0.8
CD44-206ENST00000415148 PRKG1Q13976 671 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 GK3PQ14409 553 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 TTLL4Q14679 1199 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 MAP3K21Q5TCX8 1036 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 ACAD11Q709F0 780 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 RASSF3Q86WH2 238 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 PHTF2Q8N3S3 785 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 LRRC52Q8N7C0 313 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 ANKRD52Q8NB46 1076 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 KIF12Q96FN5 646 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 SORT1Q99523 831 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 MRPL45Q9BRJ2 306 aaKnown RBP10.04□□□□□ -0.8
CD44-206ENST00000415148 ZNF358Q9NW07 568 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 PTPRFP10586 1907 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 PEX1O43933 1283 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 H2AFYO75367 372 aaKnown RBP10.04□□□□□ -0.8
CD44-206ENST00000415148 CNMDO75829 334 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 MAGEA12P43365 314 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 ASPHQ12797 758 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 VGLL4Q14135 290 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 DCAF4L1Q3SXM0 396 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 PPM1JQ5JR12 505 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 PDPK2PQ6A1A2 396 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 CASC4Q6P4E1 433 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 C10orf107Q8IVU9 208 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 CRYBG2Q8N1P7 616 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 GDPD5Q8WTR4 605 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 SREK1Q8WXA9 508 aaKnown RBP10.04□□□□□ -0.8
CD44-206ENST00000415148 NMD3Q96D46 503 aaKnown RBP10.04□□□□□ -0.8
CD44-206ENST00000415148 CLMNQ96JQ2 1002 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 DNAJC1Q96KC8 554 aaKnown RBP10.04□□□□□ -0.8
CD44-206ENST00000415148 KLHL4Q9C0H6 718 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.04□□□□□ -0.8
CD44-206ENST00000415148 TXNDC16Q9P2K2 825 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 PLXNA1Q9UIW2 1896 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 FZD10Q9ULW2 581 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 MFHAS1Q9Y4C4 1052 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 PCDHB12Q9Y5F1 795 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 CDY2AQ9Y6F7 541 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 CDY1Q9Y6F8 540 aa10.04□□□□□ -0.8
CD44-206ENST00000415148 TMEM114B3SHH9 223 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 H3BNX3 289 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 CASQ2O14958 399 aaPredicted RBP10.03□□□□□ -0.8
CD44-206ENST00000415148 TSPAN1O60635 241 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 MPOP05164 745 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 CPA3P15088 417 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 VAV1P15498 845 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 TFE3P19532 575 aaPredicted RBP10.03□□□□□ -0.8
CD44-206ENST00000415148 TYK2P29597 1187 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 BAG6P46379 1132 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 HK2P52789 917 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 BCAT1P54687 386 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 LAMC2Q13753 1193 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 TTLL12Q14166 644 aaPredicted RBP10.03□□□□□ -0.8
CD44-206ENST00000415148 KCTD2Q14681 263 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 PDK1Q15118 436 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 ZBTB6Q15916 424 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 PAOXQ6QHF9 649 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 ARHGAP22Q7Z5H3 698 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 DEFB132Q7Z7B7 95 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 STON2Q8WXE9 905 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 HSFY1Q96LI6 401 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 B3GNT5Q9BYG0 378 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 DMAP1Q9NPF5 467 aaPredicted RBP10.03□□□□□ -0.8
CD44-206ENST00000415148 IRAK4Q9NWZ3 460 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms