RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GALNTL6Q49A17 601 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 OTUD3Q5T2D3 398 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-206ENST00000409809 FAM126BQ8IXS8 530 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 ENGASEQ8NFI3 743 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 ROGDIQ9GZN7 287 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 SPASTQ9UBP0 616 aa13.15□□□□□ -0.3
COL6A3-206ENST00000409809 FAM240BA0A1B0GVZ2 78 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 KCNH1O95259 989 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 PROCP04070 461 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 CYP1A1P04798 512 aaPredicted RBP13.15□□□□□ -0.31
COL6A3-206ENST00000409809 GEMP55040 296 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 TCP10Q12799 353 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 SKIV2LQ15477 1246 aaKnown RBP13.15□□□□□ -0.31
COL6A3-206ENST00000409809 ZYXQ15942 572 aaKnown RBP13.15□□□□□ -0.31
COL6A3-206ENST00000409809 STRIP1Q5VSL9 837 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 GALNT6Q8NCL4 622 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 AP5M1Q9H0R1 490 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 PCDH18Q9HCL0 1135 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 KLHL1Q9NR64 748 aa13.15□□□□□ -0.31
COL6A3-206ENST00000409809 UMPSP11172 480 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 PGAM1P18669 254 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 RNF19BQ6ZMZ0 732 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 BTG4Q9NY30 223 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 FEM1BQ9UK73 627 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 H7C2Y5 167 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 ASNSP08243 561 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 NOS3P29474 1203 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 RPL14P50914 215 aaKnown RBP13.14□□□□□ -0.31
COL6A3-206ENST00000409809 ACAP1Q15027 740 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 NT5DC1Q5TFE4 455 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 FRMD7Q6ZUT3 714 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 PQLC1Q8N2U9 271 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 PCYOX1Q9UHG3 505 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 CHKBQ9Y259 395 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 ERVK-7P63135 1459 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 ZMYM2Q9UBW7 1377 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 NRKQ7Z2Y5 1582 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 NOTOA8MTQ0 251 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 GTF2IP78347 998 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 RHAGQ02094 409 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 BTBD8Q5XKL5 378 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 C10orf107Q8IVU9 208 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 TRPV3Q8NET8 790 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 CDRT15Q96T59 188 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 TSEN34Q9BSV6 310 aaKnown RBP13.14□□□□□ -0.31
COL6A3-206ENST00000409809 ADI1Q9BV57 179 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 PRDX6P30041 224 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 PRKCQQ04759 706 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 C6orf52Q5T4I8 152 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 FOXP4Q8IVH2 680 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-206ENST00000409809 KHDRBS3O75525 346 aaKnown RBP13.14□□□□□ -0.31
COL6A3-206ENST00000409809 GLI1P08151 1106 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 FAM153BP0C7A2 387 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 BGNP21810 368 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 MRPS22P82650 360 aaKnown RBP13.14□□□□□ -0.31
COL6A3-206ENST00000409809 PERM1Q5SV97 790 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 ZNF285Q96NJ3 590 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 IFRD1O00458 451 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-206ENST00000409809 MRASO14807 208 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 MTERF2Q49AM1 385 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 KBTBD2Q8IY47 623 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 MAGEC1O60732 1142 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 ITGA10O75578 1167 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 SASH3O75995 380 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 GRK4P32298 578 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 KCNN2Q9H2S1 579 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 COPS7BQ9H9Q2 264 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-206ENST00000409809 ITGA11Q9UKX5 1188 aa13.14□□□□□ -0.31
COL6A3-206ENST00000409809 DYRK3O43781 588 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 PLOD3O60568 738 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 PTX3P26022 381 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 CDK9P50750 372 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 MPP3Q13368 585 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 NCOA4Q13772 614 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 ZNF394Q53GI3 561 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 CDKAL1Q5VV42 579 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 CYP2U1Q7Z449 544 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 ITPKCQ96DU7 683 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 GPATCH1Q9BRR8 931 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 RAD18Q9NS91 495 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 MTF2Q9Y483 593 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 FLT1P17948 1338 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 TRIM38O00635 465 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 CRTAMO95727 393 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 NAMPTP43490 491 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 MMP13P45452 471 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 SULT1E1P49888 294 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 SRP54P61011 504 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 KCTD1Q719H9 257 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 EIF2AK1Q9BQI3 630 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 SLC38A7Q9NVC3 462 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 KCNK1O00180 336 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 F9P00740 461 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 CHRNGP07510 517 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 NIPAL1Q6NVV3 410 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 ZBTB33Q86T24 672 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 TCP10LQ8TDR4 215 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 TRMT13Q9NUP7 481 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 DHRS12A0PJE2 317 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 CD4P01730 458 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms