RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MAGEA13PA6NCF6 341 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 PRNPP04156 253 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 OXTRP30559 389 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 OLR1P78380 273 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 CYP4F8P98187 520 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 LRRC8EQ6NSJ5 796 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 VSTM1Q6UX27 236 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 VGLL2Q8N8G2 317 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 XPO4Q9C0E2 1151 aaKnown RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 NFKBIL1Q9UBC1 381 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.48□□□□□ -1.21
SCN9A-202ENST00000409435 AP4S1Q9Y587 144 aa7.48□□□□□ -1.21
SCN9A-202ENST00000409435 TCRBV21S2A2A0A5A6 115 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 GMNCA6NCL1 334 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PEX12O00623 359 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 TLR5O60602 858 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 CYP3A4P08684 503 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 ADH5P11766 374 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 ICAM3P32942 547 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 NUP107P57740 925 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 ILF3Q12906 894 aaKnown RBP eCLIP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 RUNDC3AQ59EK9 446 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 MORN1Q5T089 497 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 RSBN1Q5VWQ0 802 aaPredicted RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 EMBQ6PCB8 327 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 MARK2Q7KZI7 788 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 ETNK1Q9HBU6 452 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 TBC1D13Q9NVG8 400 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PPARGC1AQ9UBK2 798 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 CARD8Q9Y2G2 431 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 AXIN1O15169 862 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 ZBTB22O15209 634 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 SLC37A4O43826 429 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 CLASP2O75122 1294 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 SCRN3Q0VDG4 424 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 SPARCL1Q14515 664 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 VARS2Q5ST30 1063 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 SDHAF4Q5VUM1 108 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 NCLNQ969V3 563 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 MTERF3Q96E29 417 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 CNPY3Q9BT09 278 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 RUSC1Q9BVN2 902 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 NXF3Q9H4D5 531 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 SMYD3Q9H7B4 428 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 DLGAP2Q9P1A6 1054 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 GTF3C4Q9UKN8 822 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 INVSQ9Y283 1065 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 TDRKHQ9Y2W6 561 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PIAS3Q9Y6X2 628 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 GLI3P10071 1580 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PIK3CDO00329 1044 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 KPNA4O00629 521 aaPredicted RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 KLHL18O94889 574 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PDK1Q15118 436 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 AARS2Q5JTZ9 985 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 TMEM63BQ5T3F8 832 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 TRAPPC11Q7Z392 1133 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 LONP2Q86WA8 852 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 RHOT2Q8IXI1 618 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 UBALD2Q8IYN6 164 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 ANKRD27Q96NW4 1050 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 CDX2Q99626 313 aaPredicted RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 DPEP2Q9H4A9 486 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 EPB41L5Q9HCM4 733 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 DNAJC11Q9NVH1 559 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PRELID1Q9Y255 219 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 TCRBV5S4A2TA0A5A2 114 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 MTSS1O43312 755 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 IDH3BO43837 385 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PGM3O95394 542 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 EIF2S1P05198 315 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 S100A6P06703 90 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 NFICP08651 508 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 CDC25BP30305 580 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 WDR5P61964 334 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 SPIRE1Q08AE8 756 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 FBXO38Q6PIJ6 1188 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PCGF5Q86SE9 256 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 SNX31Q8N9S9 440 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 ZNF579Q8NAF0 562 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 LENG9Q96B70 501 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 MRPL38Q96DV4 380 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 CCT7Q99832 543 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 MLPHQ9BV36 600 aaPredicted RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 NIFKQ9BYG3 293 aaKnown RBP7.47□□□□□ -1.21
SCN9A-202ENST00000409435 WDR41Q9HAD4 459 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 DNAJC28Q9NX36 388 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 SLC27A6Q9Y2P4 619 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 PCDHGA3Q9Y5H0 932 aa7.47□□□□□ -1.21
SCN9A-202ENST00000409435 C9J4A7 227 aa7.46□□□□□ -1.21
SCN9A-202ENST00000409435 TIMM44O43615 452 aa7.46□□□□□ -1.21
SCN9A-202ENST00000409435 ZNF217O75362 1048 aa7.46□□□□□ -1.21
SCN9A-202ENST00000409435 ERN1O75460 977 aaKnown RBP7.46□□□□□ -1.21
SCN9A-202ENST00000409435 ACADSP16219 412 aa7.46□□□□□ -1.21
SCN9A-202ENST00000409435 PBX3P40426 434 aa7.46□□□□□ -1.21
SCN9A-202ENST00000409435 TROAPQ12815 778 aa7.46□□□□□ -1.21
SCN9A-202ENST00000409435 CUL2Q13617 745 aa7.46□□□□□ -1.21
SCN9A-202ENST00000409435 GRM3Q14832 879 aa7.46□□□□□ -1.21
SCN9A-202ENST00000409435 KPNB1Q14974 876 aaKnown RBP7.46□□□□□ -1.21
SCN9A-202ENST00000409435 SPDYE7PQ495Y7 208 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms