RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RTP4Q96DX8 246 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 DCUN1D1Q96GG9 259 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 CDRT15Q96T59 188 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 LIN28AQ9H9Z2 209 aaKnown RBP21.53■■□□□ 1.04
CTCF-202ENST00000401394 HESX1Q9UBX0 185 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 GJA3Q9Y6H8 435 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 SLC4A7Q9Y6M7 1214 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 VTNP04004 478 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 USP46P62068 366 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 KLF10Q13118 480 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 HEATR6Q6AI08 1181 aaKnown RBP21.53■■□□□ 1.04
CTCF-202ENST00000401394 SNX32Q86XE0 403 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 CCNYQ8ND76 341 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 DTNAQ9Y4J8 743 aa21.53■■□□□ 1.04
CTCF-202ENST00000401394 PROZP22891 400 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 ADORA2BP29275 332 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 TSHZ1Q6ZSZ6 1077 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 APLFQ8IW19 511 aaPredicted RBP21.52■■□□□ 1.04
CTCF-202ENST00000401394 DCLK2Q8N568 766 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 HSFX1Q9UBD0 423 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 SSX2IPQ9Y2D8 614 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 A0A087WZ62 844 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 MFSD11O43934 449 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 TPH1P17752 444 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 CHN2P52757 468 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 EFNA5P52803 228 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 NIPAL4Q0D2K0 466 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 ACAP1Q15027 740 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 NADK2Q4G0N4 442 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 ARCQ7LC44 396 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 KBTBD6Q86V97 674 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 PPP4R1Q8TF05 950 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 CSPG4P5Q96PW8 444 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 FDXACB1Q9BRP7 624 aaPredicted RBP21.52■■□□□ 1.04
CTCF-202ENST00000401394 SNX15Q9NRS6 342 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 UBP1Q9NZI7 540 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 RPS6KL1Q9Y6S9 549 aa21.52■■□□□ 1.04
CTCF-202ENST00000401394 ACKR2O00590 384 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 DNAJA2O60884 412 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 PABPC4LP0CB38 370 aaKnown RBP21.51■■□□□ 1.03
CTCF-202ENST00000401394 CCDC130P13994 396 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 AVPR1AP37288 418 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 MBTD1Q05BQ5 628 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 ANKRD20A4Q4UJ75 823 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 WDR78Q5VTH9 848 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 NCBP2-AS2Q69YL0 99 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 IL31Q6EBC2 164 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 ILDR2Q71H61 639 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 NCAPG2Q86XI2 1143 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 ICA1LQ8NDH6 482 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 OR52K1Q8NGK4 314 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 OPTNQ96CV9 577 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 PRPF18Q99633 342 aaKnown RBP21.51■■□□□ 1.03
CTCF-202ENST00000401394 NUF2Q9BZD4 464 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 SEMA6AQ9H2E6 1030 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 LZTS1Q9Y250 596 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 SNX9Q9Y5X1 595 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 TMEM233B4DJY2 109 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 HSPA4LO95757 839 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 CPA3P15088 417 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 FDFT1P37268 417 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 NCSTNQ92542 709 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 HAPLN3Q96S86 360 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 PICK1Q9NRD5 415 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 AP4E1Q9UPM8 1137 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 TK2O00142 265 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 KLHL2O95198 593 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 VDRP11473 427 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 ENO3P13929 434 aaPredicted RBP21.51■■□□□ 1.03
CTCF-202ENST00000401394 FGFR3P22607 806 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 SNAPC2Q13487 334 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 CTU1Q7Z7A3 348 aaKnown RBP21.51■■□□□ 1.03
CTCF-202ENST00000401394 SEPT1Q8WYJ6 367 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 MFSD3Q96ES6 412 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 RHBDL2Q9NX52 303 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 LMCD1Q9NZU5 365 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 FIS1Q9Y3D6 152 aa21.51■■□□□ 1.03
CTCF-202ENST00000401394 FBXO21O94952 628 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 TGM2P21980 687 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 SURF1Q15526 300 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 NRF1Q16656 503 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 BOLA3Q53S33 107 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 ZNF618Q5T7W0 954 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 IER5Q5VY09 327 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 CATSPERGQ6ZRH7 1159 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 HTR3CQ8WXA8 447 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 CATSPER2Q96P56 530 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 CREB3O43889 395 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 CRTAMO95727 393 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 ZNF460Q14592 562 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 AAGABQ6PD74 315 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 DRAXINQ8NBI3 349 aaPredicted RBP21.5■■□□□ 1.03
CTCF-202ENST00000401394 MCUQ8NE86 351 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 RCN3Q96D15 328 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 HIC2Q96JB3 615 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 SUDS3Q9H7L9 328 aaPredicted RBP21.5■■□□□ 1.03
CTCF-202ENST00000401394 PDGFCQ9NRA1 345 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 ITGA11Q9UKX5 1188 aa21.5■■□□□ 1.03
CTCF-202ENST00000401394 ATP9BO43861 1147 aa21.49■■□□□ 1.03
CTCF-202ENST00000401394 HDCP19113 662 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms