RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DNAJC3Q13217 504 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 POM121L1PQ3SYA9 428 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 AGKQ53H12 422 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 PDE4DIPQ5VU43 2346 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 RSBN1Q5VWQ0 802 aaPredicted RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 GJB7Q6PEY0 223 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 FAM124AQ86V42 546 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 METTL16Q86W50 562 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 CCDC185Q8N715 623 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 FNDC5Q8NAU1 212 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 COLGALT1Q8NBJ5 622 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 FBXO36Q8NEA4 188 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 LRRC39Q96DD0 335 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ZDHHC15Q96MV8 337 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 P2RX7Q99572 595 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 RAD21L1Q9H4I0 556 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ADPRHL2Q9NX46 363 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 MRPL39Q9NYK5 338 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 BARX2Q9UMQ3 279 aaPredicted RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 SHOC2Q9UQ13 582 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 MRPS17Q9Y2R5 130 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 TMX2Q9Y320 296 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 SESN1Q9Y6P5 492 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3DA0A087WVF3 549 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3IA0A087WXS9 549 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3EA0A087X179 549 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3KA0A087X1G2 549 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3FA6NER0 549 aaPredicted RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3LB9A6J9 549 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ADM5C9JUS6 153 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 KRT75O95678 551 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3HP0C7X1 549 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 CPA3P15088 417 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 NFKB1P19838 968 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 AKT2P31751 481 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 RCVRNP35243 200 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 PTSQ03393 145 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 MTAPQ13126 283 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 CCNIQ14094 377 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3GQ6DHY5 549 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3CQ6IPX1 549 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ZNF621Q6ZSS3 439 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 BARGINQ6ZT62 677 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 FAM228AQ86W67 206 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 NRSN1Q8IZ57 195 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D3Q8IZP1 549 aaPredicted RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 SH2D3CQ8N5H7 860 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 OR10G6Q8NH81 332 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 A1CFQ9NQ94 594 aaKnown RBP7.34□□□□□ -1.23
UPF2-203ENST00000397053 NUDT5Q9UKK9 219 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 LYVE1Q9Y5Y7 322 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 ADGRL2O95490 1459 aa7.34□□□□□ -1.23
UPF2-203ENST00000397053 CPSF1Q10570 1443 aaKnown RBP7.34□□□□□ -1.24
UPF2-203ENST00000397053 MAGEB16A2A368 324 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 H3BNH8 94 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CACNB4O00305 520 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 UBDO15205 165 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TPH1P17752 444 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 KCNA3P22001 575 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 BDNFP23560 247 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 HSPA13P48723 471 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 MASP1P48740 699 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CASP4P49662 377 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 PDX1P52945 283 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 HNRNPH2P55795 449 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 IL5RAQ01344 420 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 PFKPQ01813 784 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 COX10Q12887 443 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CBWD6Q4V339 395 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ATAT1Q5SQI0 421 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ATG9AQ7Z3C6 839 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SYT12Q8IV01 421 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ZFP28Q8NHY6 868 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 STARD8Q92502 1023 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 NSMCE2Q96MF7 247 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 RUSC1Q9BVN2 902 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CELF4Q9BZC1 486 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 ASB7Q9H672 318 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 C10orf88Q9H8K7 445 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 PXMP2Q9NR77 195 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ZNF624Q9P2J8 865 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 OPTCQ9UBM4 332 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TSPAN16Q9UKR8 245 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SLC9A8Q9Y2E8 581 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TRIM66O15016 1216 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CSH1P0DML2 217 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CSH2P0DML3 217 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 S100GP29377 79 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 HPCAL1P37235 193 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TMED10P49755 219 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 NDST1P52848 882 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 PPP4CP60510 307 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 OVGP1Q12889 678 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ITPK1Q13572 414 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 KRR1Q13601 381 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 PKN1Q16512 942 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 GJC2Q5T442 439 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 OR8H2Q8N162 312 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 OR56A4Q8NGH8 313 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms